RNA id: TCONS_00021658


Basic Information

Item Value
RNA id TCONS_00021658
length 2136
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_011125
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54925437 ~ 54928813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaagatcaatgtattgaaaactgctgatttacGGGTGATTTATGAGTGTACAACAGCAAACCaaacaatatattgctttaaagtattcaaaatgttcataaaagtcacttttcccaactttttaaagttgttaaAAGATAGATTAAGgtcacataatgcaattcaaaccagggaaataaaataaaaactgctaatttgCGATGTTTCACGGTGCAGCTCTGCTGAGAGTGCATGTGGTGTGCTCAGCGTGTGTTGGGTATGATAGGTGTTTGGAGTGCGTGAGCTCCACCCACCGCATCCCCAGCTGTGCGGTGGCCGGGCTGTGAGCGTCTTTCCTCGGGCAGCGCTGCTCAGACGCGCCGGTCTGTGAGTCGCAGAGCTCGGATGATGCCGCTGACGCTCGCCTGCGCGTCGCTCCTGCTGATGTGCGTCTGCTGGAGCGTCGCGTTGTGTCCGCCGCGCTGTGTCTGCTCCGGGACGCCTCTCACCGTGCGCTGCTCGCCAACTGACCTCCCGGGACTCACCGGCACTCTGAGCCGCTCCGGAGACTCCCTGCAGCAGCTACAGCACAGCAGCTTCCGCGGGCTCCGGAACACCACACTGCTGGAGCTCAGCCACAACCGCATTACGGAGATCGGCTCTCATGCGTTCTCGTCTCTGCTAATGCTGCGTTCGCTAATCCTGAACAACAACGCTCTAGTCCTGATCCATCCCGAAGCGTTCTCCATCCCCGGGAGTCCTCTAGAAGAGCTCAGTCTGCGCTCGTCTCTGTATAACCACACATCTCTGACGGACCTCATAACCGCGCTGCGATGGGGGGAATTATTCAACCTGCAGCGGCTCGACCTGTCGGGCAACCGGCTCGTCCTGCTGCCACCGGGGATGTTCACTCCGCTGCCAAGACTACAGTATCTACACCTGAACAACAACTCTCTGGTGGCCGTCTACAACTGCACATTCACTGGTGTCGAAAATCTTCTGGAGCTGGATTTGAGTAGGAATGCATTCAAAATGATCAGCGGCGAAGGTCTGCATGAGTTGGAGCGACTCAGTTTGGTGCGACTAATGTTGAGTCAGAACCCTTACACATGCACATGTGAAATGCTTGAGTTTGTGCATTGGTTGAACAGCTCGAAGGTTAAGATTGGCGATGTGGAGAGGTTGAGCTGTGAATCCCCTGCTGAAATGCGTAATGTGTCTTTACGGGTTATTAATGCGCAGGTGTTGGGGTGTTACGGTGAAGCGCAGAAAGTCAATACCGATTTGTCGCTGCATACGTCTTATGTGTTTCTGGGATTAGTGCTGGGATTCGTGGGCATGGTGTTTCTGTTGGTGGTTTACCTCAACCGAAAGGGCATTAAGAAGTGGATCACGGATATACATGAAGCCTGTCGAGATGTGCTGGAGGGGTATCATTATCGATACGAACTTGACTCTGATCCACGACTGGGACATGTTTCAAACAGAGACCCGCGTAAGGCGCGTGCTCCTACTGACGGTGGTATTTCACAGATTCCATCTGATGTGACTCTGTAAAAGGACTGTAAACAACTGCATAGTGGAAATACTTCAATGTATATTATGACCTGATATTTCCAGCACATGcttattggaaatatgtgccacaaactattttttttttttttaaatacatcacaTGTGATTTGTTTcacattttagatgacaaatccactagagagcgctgtctgcatttttgcgaatctgaaatacgtcaCTAATAGTGaattttgttgcacgttttagacaacagatccactagagggcgctgtctacatgtttgcaaatctgaaatgctttacttagggtacattttgttgtacatttcaaataacaaatccactagagggcgctgtctgcattttttgcgaatctgaaatacgtcaCTAATAGtgcattttgttgcacgttttagacaacagatccactagagggcgctgtctacatgtttgcaaatctgaaatgctttacttagggtacattttgttgtacatttcaaataacatatccactagagggcgctgtctacatttgtggGAATCTCAAATACGATATTTGGAGTGCGTTTCATAGTTTGTGTATTAGTTGAACAGTTCGAAGGTTACGATTGCTGATGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120209-2 Predicted to be involved in negative regulation of canonical Wnt signaling pathway. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human TPBG (trophoblast glycoprotein).

Ensembl:

ensembl_id ENSDART00000193838

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021654 lncRNA downstream 130863 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021649 lncRNA downstream 158244 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00022304 lncRNA downstream 328016 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00022303 lncRNA downstream 393347 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022302 lncRNA downstream 393417 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00021851 lncRNA upstream 70173 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021666 lncRNA upstream 263359 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00022305 lncRNA upstream 263359 55192172 ~ 55202200 (-) False XLOC_011131
TCONS_00021852 lncRNA upstream 263411 55192224 ~ 55202075 (-) False XLOC_011131
TCONS_00021853 lncRNA upstream 263411 55192224 ~ 55204179 (-) False XLOC_011131
TCONS_00021657 mRNA downstream 6177 54891650 ~ 54919260 (-) True XLOC_011124
TCONS_00021656 mRNA downstream 17849 54890835 ~ 54907588 (-) False XLOC_011124
TCONS_00021655 mRNA downstream 114973 54804815 ~ 54810464 (-) True XLOC_011123
TCONS_00021651 mRNA downstream 125235 54785264 ~ 54800202 (-) False XLOC_011122
TCONS_00021652 mRNA downstream 125235 54785265 ~ 54800202 (-) False XLOC_011122
TCONS_00021659 mRNA upstream 1934 54930747 ~ 54942532 (-) False XLOC_011126
TCONS_00021660 mRNA upstream 2893 54931706 ~ 54942534 (-) True XLOC_011126
TCONS_00021661 mRNA upstream 18955 54947768 ~ 54971277 (-) False XLOC_011127
TCONS_00021662 mRNA upstream 35924 54964737 ~ 54978981 (-) True XLOC_011127
TCONS_00021663 mRNA upstream 74308 55003121 ~ 55028791 (-) False XLOC_011129
TCONS_00021653 other downstream 138454 54785737 ~ 54786983 (-) False XLOC_011122
TCONS_00021650 other downstream 158244 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021635 other downstream 1269898 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 1275442 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2977656 51941830 ~ 51947781 (-) True XLOC_011089

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000086_02893723_02895660.mRNA True 1669 mRNA 0.50 2 CI01000086 2893421 ~ 2895833 (-)