RNA id: CI01000086_02893723_02895660.mRNA


Basic Information

Item Value
RNA id CI01000086_02893723_02895660.mRNA
length 1669
RNA type mRNA
GC content 0.50
exon number 2
gene id CI01000086_02893723_02895660
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2893421 ~ 2895833 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGATCAGGAGGTGTTTCTAGGTAAAACTGTTAGTAATGAGCTCCTAGAGTGAGGAGGACAGTGTCATACTACACGCGTGCTGCCTACTACAGCATGTGCACTGACACTGAAGAGCGCAGCCCGTGAAGACGGTGATCAGATGCTCCGGACTGTGAGTGTGAGAGTTTGGATGATGCCGCCGGCTGTGCCGCTGACGCTTGTCTGCGCGATGCTGTGCGTCTCCACATGCGTCGCGTTGTGTCCGCCGCGCTGCGAGTGCTCTGAAAGTCAACATACGGTGCGCTGCGCGTCTGCCGGGCTTTTCCGTATCCCAGCCGCGATCCCGAGCGACACGAGCAGCCTAATCATCACCGGAAACACGATTCCCAGACTCGATCACAGCGCGTTCAACGGACTGCAAAACGTCACCCACCTAAACCTAAGCAATAATGGCATTATGGAGGTTGGATCGCATGCATTCTCTTCTCTGCACATGCTGCGTTCTCTAATCCTGAACGACAACCAGCTGGTGCTCATCCATCCAGAGGCGTTCTCCGTGCCTGGAAGCCCCCTGCAGGAGCTCATCCTCCGCTCGTCTCTCTACAACTACACATCTCTGACTGACCTCATCACCGCCCTGCGCTGGGGCGAGCTCACAAATCTGCTGCGCCTCGACCTGTCGGGCAACCGCCTTGTCCTCTTACCCCCGGGGATGTTCGCTCCTCTGCCGAACCTGCAGCATCTCCATCTAAACAACAACTCTCTGGTGGCCGTCTACAACAGCACTTTCTCTGGTATTGATCAACTTTTGGAGCTGGACTTGACCAGAAATGCATTTAGAACTATCAACGATGAGGGTCTTCACGAGTTGGAGCGACTCGGTCGGGTCCATCTGCTGTTGGGTCAGAATCCTTACGTGTGCACGTGTGAAGCGCAAGAGTTTGCGAACTGGCTAAATAGTTCAAAGGTCAGGGTGGGCGATGCGGACAAGCTGTATTGCGAGTTCCCCGCAGCGCTGCGTGACGTGTCTTTGCGGGTTCTCAGTGCACAGGCATTGGGGTGTTACGGTAAGCCGTACGAAGAGATTATCGACTTGTCCCTACATACTTCCTACGTGTTCCTTGGATTAGTGCTGGGATTCGTTGGCATGGTCTTTCTACTTGTCGTCTACCTCAACAGAAAGGGTATCAAGAAATGGATCACAGACATACATGAAGCATGCCGAGATGTGCTGGAGGGGTATCATTACCGTTATGAAATTGACTCTGACCCACGACTGGGGCGTGTTCCAAACATTAACCAGGGTCGGCCTCGAAATGACCCGCATTTGGGGCACATCCCTTCTGACGCCCGTATCACACAGATGCCGTCGGATGTGACTCTATAACTGGACTGCAAATTGCTGCACAATGAACCCATTTTTTATAGAAATGTTTATAGGTATTATGTCCTGATATTTCAGTCTGTAGCAAAGTGGAAAAATCAAGGAAAATCATTTGTCATTGAGACTAGTGGTCAGCAGATATTATTAACTAGAGAGATGGCTGGCTGATGGCTTATGTAATGCCAATTTATGCATGATGTAGGCTAATACAATATATATTTATTATATACAATATATATTTGACCAGTGCAATATGAGTCAGCGCAATTTTTGGTCTGTTTTCCACAAGGAGAAATTGTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340428 lncRNA downstream 16377 2876747 ~ 2877044 (-) True G299861
TU340392 lncRNA downstream 167587 2725595 ~ 2725834 (-) True G299825
TU340370 lncRNA downstream 198442 2651013 ~ 2694979 (-) True G299803
TU340372 lncRNA downstream 239011 2653669 ~ 2654410 (-) True G299805
TU340156 lncRNA downstream 287025 2547583 ~ 2606396 (-) True G299609
CI01000086_02886112_02888612.mRNA mRNA downstream 3208 2885447 ~ 2890213 (-) True CI01000086_02886112_02888612
CI01000086_02610598_02642920.mRNA mRNA downstream 250501 2610567 ~ 2642920 (-) True CI01000086_02610598_02642920
CI01000086_02543856_02545475.mRNA mRNA downstream 347613 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
CI01000086_02403053_02403317.mRNA mRNA downstream 490104 2402872 ~ 2403317 (-) True CI01000086_02403053_02403317
CI01000086_02400288_02400580.mRNA mRNA downstream 492813 2399858 ~ 2400608 (-) True CI01000086_02400288_02400580
CI01000086_02897831_02901375.mRNA mRNA upstream 1971 2897804 ~ 2901375 (-) True CI01000086_02897831_02901375
CI01000086_02906694_02918246.mRNA mRNA upstream 10380 2906213 ~ 2918246 (-) True CI01000086_02906694_02918246
TU340140 other downstream 25318 2865682 ~ 2868103 (-) False G299598
TU340143 other downstream 25318 2865682 ~ 2868103 (-) True G299598
TU340155 other downstream 438856 2454446 ~ 2454565 (-) True G299608
TU340104 other downstream 990002 1903205 ~ 1903419 (-) True G299570
TU340046 other downstream 1198244 1668206 ~ 1695177 (-) True G299528

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021658 True 2136 mRNA 0.47 2 NC_007127.7 54925437 ~ 54928813 (-)