RNA id: CI01000086_02906694_02918246.mRNA


Basic Information

Item Value
RNA id CI01000086_02906694_02918246.mRNA
length 2684
RNA type mRNA
GC content 0.50
exon number 14
gene id CI01000086_02906694_02918246
representative True

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 2906213 ~ 2918246 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGCTCTGCCTCTCCGAGAGGCTTGAATTGCACAGATGATCAGAGATCTTTGGCACCTGGATGCAACAGTCTGAGTCGACGCTCCATGACGTGCTGTGAGACCATGTCGCTGCGGAACGTCACTAGTGATCTTCTGCACAGGCAGATCAGGGAGAAGAGAGCGCTGGACTTCCAGAGACACTATCATGTGACCGACCCGTTTATAAAGCGTCTGGGGCTGGAGGCTGAACTACAGGGTCACTCTGGCTGTGTCAACTGTCTGGAGTGGAATGAGAAAGGAGATCTCCTAGCCTCAGGTTCAGATGATCAGCATGCCATCATCTGGGATCCCTTCCGGCACAAAAAGCTCATCACTATGCACACAGGACATGCAGCTAACATCTTCTCAGTCAAGTTCCTCCCTCACTCCGAAGACCGAATCTTGATCACAGGAGCCGCCGATACCAAGGTGCACGTGCACGACTTGACGGCGAAGGAGACCATTCACATGTTCTCAGACCACACTAACCGCGTCAAACGGATTGCAACGGCTCCCATGTGGCCCAACACCTTCTGGAGCGCGGCTGAGGACGGCGTCATTAGGCAGTATGATCTGAGAGAGAGCAGTAAACGCTCGGAGGTTTTAATTGATCTGACGGAATATTGCGGGCAGCTTGTGGAAGCAAAATGTCTGGCGATCAACCCCCGTGACAACAACTACATGGCTGTGGGAGCTAACGGGCCTTTTGTTCGGCTCTATGACATTAGAATGATCCACAATCACAGGAAGTCTATGAGTCAAAGTACCTCGGCTGGTGTTCATACGTTTTGCGACAAACGGAAATCGATACCGGATGGTGCTGGACAGTACTATGTCGCAGGTCACTTACCTGTGAAGCTTCCTGACTATAATAACAGATTACGAGTTCTGGTGGCAACCTATGTTACATTCAGCCCCGACGGTACTGAACTGCTGGTAAACATGGGTGGAGAACAGGTGTATTTATTTGATCTGACGTTCAAACAGAGACCGTACACTTTTCTGCTGCCCAAAAAGTGCCATCCATCATCAGAGGTACAAAATGGGAAAACCACCAACGGTGTGTCCAATGGGATTCATCTACCTGCAAGCCGCCTTAAACTGGCTAAATTTACCAGTGGCTCCAATGATCTTCCTCCTCATCTGGAGAGGATCAAGCAACAGGCTAATGATGCGTTCGCGCGGCAGCAGTGGACTCAAGCCATTCAGCTCTACAGTCTGGGCCTCCATGAAGCCAGTCAAAATGCTATGCTGTATGGAAACCGTGCTGCTGCATACATGAAGCGAAAATGGGATGGTGATCACTATGACGCACTGCGAGACTGTCTTAAGGCCTTGTCCCTGAACCCAGGCCACCTGAAGGCGCACTTCCGTTTAGCGCGCTGCCTCTTTGAGCTCAAGTACATCGCTGAGGCTCTGGAGTGTCTAGATGACTTCAAGGGCAAGTTTCCAGAGCAGGCACACAGCAGCGCTTGTGACGCCCTCGACAAAGACATCAAGGCTGCCCTCTTCTCAAAAACAGACTCCTGTAGGTTCTTGTCTTGTCTGTCTTGGATCTTGGATTTTGTTTGTGCATGCATTTTAATAATCAGGACTCTGGATGTTTTTTATGCATCTAATCTAGCTGACGACAAAAAGGGGAACAGCTCCATCCGCTTGCATAATTTCAGCCGGAAAGAATCCATCCCGGAGGATGAGATCGTTCTCAGAGAGCGAAGCTTCGACTACAAGCATCGCTACTGTGGCCACTGCAATACGACCACTGACATTAAGGAAGCCAACTTCTTTGGAAGTAAAGGACAGTACATTGTGAGCGGTTCAGATGATGGGTCATTTTTCATCTGGGAGAAAGAGACAACGAACCTGGTGCGGATCTTACAGGGGGACGAGTCTATAGTGAACTGCCTACAGCCGCACCCCAGCTACTGCTTCCTGGCCACCAGTGGTATCGATCCCGTGGTGCGACTGTGGAACCCAAGACCGGAGTCGGAGAATGAGAACTGTCGGGTGGTGGAGGACATGGAGAGTGCGGCCCAAGCCAACCAACGGCGCATGAATGCGGATCCGCTGGAGGTGATGCTGTTGAACATGGGCTACCGCATCACAGGCCTGAGCAGCAGAGGAGCCGAGGGCTCGGATGAAGACGACAGCTCGGAGGGCCAGGTTCAGTGCCGCTCTAGCTAGAACGCCGTCACGGACCTCCACACGCACCCGTCCCACGTTTGAGAAGAGGGCAAAGCACCTTAGATATTTACTTTTGCAATTTCAGTTCTTCAACGTGATGCTGAGTGAATGAATGCTGCCGCTCCGCACTATGCAGAAGTTTGGAGAAGTGGGAAACACAATCGCACAATCCAAGTCAAGTCAAAAGCACTTAGAGATTAATGTCCGCAAAATCATTTTAAAAAGCGCGCGCTAAGAAGAGTGTTGGCGTACCGTCAGATTAAAGCTTGTTTCCAAAGTCGCAAAGCGCTTGGGTCTTTCTAATGCGGGGCTTGCTATTGGACGCTGTTGGCCATGATATTCTCATTTTCTTTCTTTTCCCAAATGAACTTAATCATCTTTATGAGCGCCAGAGGACAGTAAAAAATAAGTGTTATTGTTCAGAAAAGTATGTTTATAGGTCTGCAGCACTTTCTTTTGGAATATATTCTGGAAAAATAAA

Function

GO: NA

KEGG:

id description
K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU340428 lncRNA downstream 29169 2876747 ~ 2877044 (-) True G299861
TU340392 lncRNA downstream 180379 2725595 ~ 2725834 (-) True G299825
TU340370 lncRNA downstream 211234 2651013 ~ 2694979 (-) True G299803
TU340372 lncRNA downstream 251803 2653669 ~ 2654410 (-) True G299805
TU340156 lncRNA downstream 299817 2547583 ~ 2606396 (-) True G299609
CI01000086_02897831_02901375.mRNA mRNA downstream 4838 2897804 ~ 2901375 (-) True CI01000086_02897831_02901375
CI01000086_02893723_02895660.mRNA mRNA downstream 10380 2893421 ~ 2895833 (-) True CI01000086_02893723_02895660
CI01000086_02886112_02888612.mRNA mRNA downstream 16000 2885447 ~ 2890213 (-) True CI01000086_02886112_02888612
CI01000086_02610598_02642920.mRNA mRNA downstream 263293 2610567 ~ 2642920 (-) True CI01000086_02610598_02642920
CI01000086_02543856_02545475.mRNA mRNA downstream 360405 2542368 ~ 2545808 (-) True CI01000086_02543856_02545475
TU340140 other downstream 38110 2865682 ~ 2868103 (-) False G299598
TU340143 other downstream 38110 2865682 ~ 2868103 (-) True G299598
TU340155 other downstream 451648 2454446 ~ 2454565 (-) True G299608
TU340104 other downstream 1002794 1903205 ~ 1903419 (-) True G299570
TU340046 other downstream 1211036 1668206 ~ 1695177 (-) True G299528

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021661 False 3570 mRNA 0.47 16 NC_007127.7 54947768 ~ 54971277 (-)
bowfin (Amia calva) AMCG00010858 True 5677 mRNA 0.54 14 CM030133.1 2712527 ~ 2723800 (-)