RNA id: TCONS_00021660


Basic Information

Item Value
RNA id TCONS_00021660
length 1582
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_011126
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54930747 ~ 54942534 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTCGGCTAGCGCTCGGCTTTTTCCGGCGGCGCGTGTGCGGGCGTCATGACGTCAGCGCGCACTCTGTGATGGCGGATGTAAGCGAGATTGACACCATGAAGCACTACCACGGCGGTTTCGAGAAAATTGACAGAGAAATGAGCCGGTACCCGCACTGTATCGTCTGGACACCGATCCCGGTACTGACCTGGTTCTTGCCCTTCATTGGCCACATGGGCATCTGCAGCTCCGCCGGGGTGATCCGGGATTTCGCAGGACCGTACTTCGTCTCAGAGGACAACATGGCCTTCGGGAAACCAACCAAATACTGGAAGCTGGATAAGAACAAAGTGTATGGTGGTGGAGCAAACGCCTGGGATGTGGCCGTACATGAAGCGTCGGAGGAATACAAGAACAGAATGCACAATCTGTGTTGTGATAACTGTCACTCTCATGTGGCCATGGCTCTGAATCTGATGCGCTACAACAACAGCTCATCCTGGAACATGGCTAACCTGTGCCTGCGCTTCCTCATCCACAGCAAACACGTCAGCTTCGTGGGGTTTCTGAAGACCTGGCTGCCTTTCCTGATGATTTGTGGGGTCATCGTCACCATCGCCCTTGCCGTCAACCTGCGGTGACTGATGCATGCTGGGAAACGGCGCCGACAGGAGCATCAAACACTGAGAGATGCTGCACAGGATTAACCCAAACTCAGGATTAGCAAGAGTCACGGCTGTAAAACTCAATCAAATGTGAATCTGCTGGAATTACAGAGAGCGCTCCACACCTCACGACTCGCAGATTGTGTGTACATATGTGAATTACGGGGACGCTTTACATTACAGGAGCTTCAACAGGAGATATCATCATATCACACATGCAGAATATCAGTGGCTTACAGTGAAGAAACGCTTCCCATCGAGATGAGCTGCATTCGAAGAAGTGTGCACTCTGAAATATGATGGGTTGTTTTAACACAATGTTTGGTCAGATATGGAccaacccaactgttgggttaaaaaaaagagCAGTTTTAATTCAGTTAAAATAATTCAGCATATTTGACCCAaggttgtgtttatttattgtttaaatataaatgacactttttaaactCAGTGGTTGggttttcccagtgttgggtcaatttaattaaatttaaatgacactttttaactcagcagttgtgtttgtccatatttaactcaaatttgggttaatttattgaattatatttaaattacaccTTGAAAACTCAATAATTGGGTCAGTCTATATTTGGCCCAACGTTGggtcaatttaattaattaaatttaaattacaattttaaaactcaatagttgggtttgtctatatttgacccaatgttgagtcaatttatttaattaaatttaaatacaattttaaaactcAATATAGTTGGGTCTGTCTATATTTGGCTAGACGTTTggtcaatttaattaattaaatttaaattacagttttaaaactCAATAGttgagtttgttcatatttgacccatgcaacattgaatttatttaattaaatttaaatgacactttttaactcaGTGGTTGGGtctgtctatatttgaccc

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-17 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM222 (transmembrane protein 222).

Ensembl:

ensembl_id ENSDART00000101402

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021654 lncRNA downstream 137132 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021649 lncRNA downstream 164513 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00022304 lncRNA downstream 334285 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00022303 lncRNA downstream 399616 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022302 lncRNA downstream 399686 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00021851 lncRNA upstream 56452 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021666 lncRNA upstream 249638 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00022305 lncRNA upstream 249638 55192172 ~ 55202200 (-) False XLOC_011131
TCONS_00021852 lncRNA upstream 249690 55192224 ~ 55202075 (-) False XLOC_011131
TCONS_00021853 lncRNA upstream 249690 55192224 ~ 55204179 (-) False XLOC_011131
TCONS_00021658 mRNA downstream 2893 54925437 ~ 54928813 (-) True XLOC_011125
TCONS_00021657 mRNA downstream 12446 54891650 ~ 54919260 (-) True XLOC_011124
TCONS_00021656 mRNA downstream 24118 54890835 ~ 54907588 (-) False XLOC_011124
TCONS_00021655 mRNA downstream 121242 54804815 ~ 54810464 (-) True XLOC_011123
TCONS_00021652 mRNA downstream 131504 54785265 ~ 54800202 (-) False XLOC_011122
TCONS_00021661 mRNA upstream 5234 54947768 ~ 54971277 (-) False XLOC_011127
TCONS_00021662 mRNA upstream 22203 54964737 ~ 54978981 (-) True XLOC_011127
TCONS_00021663 mRNA upstream 60587 55003121 ~ 55028791 (-) False XLOC_011129
TCONS_00021664 mRNA upstream 61939 55004473 ~ 55028740 (-) True XLOC_011129
TCONS_00021665 mRNA upstream 163011 55105545 ~ 55122776 (-) True XLOC_011130
TCONS_00021653 other downstream 144723 54785737 ~ 54786983 (-) False XLOC_011122
TCONS_00021650 other downstream 164513 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021635 other downstream 1276167 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 1281711 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2983925 51941830 ~ 51947781 (-) True XLOC_011089

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000086_02897831_02901375.mRNA True 460 mRNA 0.50 5 CI01000086 2897804 ~ 2901375 (-)