RNA id: TCONS_00021851


Basic Information

Item Value
RNA id TCONS_00021851
length 918
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_011128
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54998986 ~ 54999993 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCAGAGAACACAAACCAACTAAGAGAGATTAATTCAACACAGCGGggagagcagagagagagaggacaacATCAAGTTTCCAGAGCCAGTCAGTTCAGCAAGAAATGAGGTGTGAGATTCAGTGGATGACTGTATGTGTAGAAGAATctaatgtgtttttttctctaaTAGAAATTGTTCCTACACTAATGAGAAAATATTTGTAGGTCATTTCCTGGGTTTTTCCGAGAGGAGCGTAGAGGGAAAAGCTGTTTTGCACCATATAAGTGGCAATGTAAACGCTTATTAATGTATATTTACCTGCTGGACAAACATGAAAAACACCAAAAGGAGAGGCAGAACTACATCTCACTATGGACTTGGAAGACGGcaattaaataaaagtacaagAAAATTTCCCCCAATCAGAGCTTTCAGATATACTTGTGAAATTGTTTCTAAAACTGGCCAACATCTGTGGTGGATGTTTGTTACGCAAGTCTTCAGGTatgttcttttttcttctttttttgatgatgatgatgatgagacgCTAATACACTCTCAGTAATTGTGCTAAAGCTGGGGCTTTTCAaagtttgtgtttgtatgtaaaGCTCCACATTAGTATCTTAAAACCAAAACCTAAAGTGTACATATTGCACTCAAAAATACAACCATGTTCTCTTTTAACCCCTTGAAACATCATGGCAgtttgtgtacctttatttttttctagggatgcaccgataccattttttttgGAACCGATCCGATCTCGATACCAAAAATTCTGAGAATTGATTAACACAGACCTGatactgtgctgtttttttttttttctaagcataatacagtttctatagctctggtgataaactcaaataataaatcttctttagtaaaaataacagacctataggcTGACTGTATATGAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021654 lncRNA downstream 204412 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021649 lncRNA downstream 231793 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00022304 lncRNA downstream 401565 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00022303 lncRNA downstream 466896 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022302 lncRNA downstream 466966 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00021666 lncRNA upstream 192179 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00022305 lncRNA upstream 192179 55192172 ~ 55202200 (-) False XLOC_011131
TCONS_00021852 lncRNA upstream 192231 55192224 ~ 55202075 (-) False XLOC_011131
TCONS_00021853 lncRNA upstream 192231 55192224 ~ 55204179 (-) False XLOC_011131
TCONS_00021854 lncRNA upstream 194059 55194052 ~ 55197716 (-) False XLOC_011131
TCONS_00021662 mRNA downstream 20005 54964737 ~ 54978981 (-) True XLOC_011127
TCONS_00021661 mRNA downstream 27709 54947768 ~ 54971277 (-) False XLOC_011127
TCONS_00021660 mRNA downstream 56452 54931706 ~ 54942534 (-) True XLOC_011126
TCONS_00021659 mRNA downstream 56454 54930747 ~ 54942532 (-) False XLOC_011126
TCONS_00021658 mRNA downstream 70173 54925437 ~ 54928813 (-) True XLOC_011125
TCONS_00021663 mRNA upstream 3128 55003121 ~ 55028791 (-) False XLOC_011129
TCONS_00021664 mRNA upstream 4480 55004473 ~ 55028740 (-) True XLOC_011129
TCONS_00021665 mRNA upstream 105552 55105545 ~ 55122776 (-) True XLOC_011130
TCONS_00021667 mRNA upstream 208405 55208398 ~ 55259199 (-) True XLOC_011132
TCONS_00021653 other downstream 212003 54785737 ~ 54786983 (-) False XLOC_011122
TCONS_00021650 other downstream 231793 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021635 other downstream 1343447 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 1348991 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 3051205 51941830 ~ 51947781 (-) True XLOC_011089

Expression Profile

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