RNA id: TCONS_00021664


Basic Information

Item Value
RNA id TCONS_00021664
length 1888
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_011129
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 55003121 ~ 55028791 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATTTTGGCAGCTATAAGCGGTTTTTCTCCATGTGAAGGAGCCTTGGTGACCTTTATCTCGACGGGAGGTTCCCTATGATGAAAACTATTTAACAGCGGCTCCTCAATGAGCTGAAACTCCTCAGACTGAAGATGATCAGCATTAGTGTGTTTTGTCTTCTGCTGTGCACCGGAGCGTCTGCTTTCAGGTTTGAGGAGCTGACGCAGTATGTGAACACACACCAAGACGAGTTTGTGGAGacacTCAGGCAGTGGATCGCTGTGGAGAGCGACTCCAGTGATGTTACGAAGAGAGCAGATTTACACCGAATGATGGACATGACGGCAGAGAAACTGCGTCTCATTGGAGGAAAAGTGGAGATGATCGATATCGGGACGCAGACGCTGGCCAATGGCAGCTCCATCGATCTGCCTAAAGTGGTCACGGCTCAGTTTGGTGACGACCCCAGCaaacacactgtgtgtgtgtacggACACGTGGACGTCCAGCCCGCCAAGATGGAGGACGGGTGGAGCACTGAACCCTACGAGCTGACCGACCTCAACGggAATCTGTATGGCAGAGGAGCGTCTGATAATAAAGCCCCAGTCCTGGCCTGGATTCACGCGCTGGAGGTCTACAAGGCTCTAAACATCgatccTCCAGTGAATGTGAAGCTCCTGATTGAGGGTATGGAGGAGACGGGCTCCAACGGTCTGGAGCAGATGATCGTGGCCCATAAGGACTCCTTCTTCTCTGCTGTGGATTTCATCATCATCTCAGACTGTGTGTGGCTCAGCAAGCGGCCCGCGCTCACATACGGCACCAGGGGGAACTGCTACTTCTGCGCAGAGgTGGAGGGTCCCAAGAAGGATCTTCACTCTGGTGTCTATGGAGGAACAGTGGTGGAGCCCATGACGGATCTGATCGGGATCTTAGATAAGCTGATCAGCTCCAGTGGGCAGATCCTGGTTCCGGGCATCAGGGAGGCAGTGGCTCCTCTAGGGGACGAGGAGTGGAGCAGATATCAGGACATTGAGTTTGACCTGCAGAGCTTTAAACAGGACATCGGCCTCACTCAGCTCATGTACAGCAACAagGTGGATCTGCTTGCCCACCGCTGGCGTCACCCCACCGTCTCCATCCACGGCATCGAGGGCGCTTTCTCCTCGCCCGGCACCAAGACCGTCATCCCAGCCAAAGTCATTGGGAAATTCTCCATCCGCCAGGTGCCAGACATGGACCCAGCCGTGGTGGAGAAACAGGTCACAGATTATTTACACTCAGTGTTTGCGAAGCGCAAGAGTCCCAATAAACTCAACGTGACCATGGTCATCGGGGCCAAACCGTGGCTGGCGGATCCCAAACATCCGTTATTTGATGCCGGAAAAGCAGCAGTCAAGAGAGTTTTTGACGTGGAGCCTGACCTGATCCGAGAAGGAGGAACGATCCCCATCGCCAGAACCTTTCAGGACGTCACAGGAAAAAGCATCATCATGCTGCCCATCGGAGGCTTCGACGACGGCCTGCACTCCCAGAACGAGAAGATCAGCAGACGCAACTACATTGAAGGAACCAAACTCTTCATCGCGTACCTGTACGAAGTGTCCCAGATCAAGAAGTACTGAAGAGGctctgcaaacaaacacacacatgagcaGCATTATGCAAATCCCCGACTGACTAACACATTTCTCTAAACTGATGCACATCCACTGGTTAATGGAGATCATGGAGATTGCTGgtgcaaattaataaaacaagtgTTTTGCAATGTATGTGTGGTGGTTTTAtttgcatataaatatatttaattcaaatcaTCTTTAattctacagcgcttttacaatggaaattgtgtcaaagcagcttcacatagaagatcatagtgttataattatttctt

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005829 cytosol cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016805 dipeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050913-105 Predicted to enable dipeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytosol. Is expressed in eye; fourth ventricle; third ventricle; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDART00000156368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021851 lncRNA downstream 4480 54998986 ~ 54999993 (-) True XLOC_011128
TCONS_00021654 lncRNA downstream 209899 54787373 ~ 54794574 (-) True XLOC_011122
TCONS_00021649 lncRNA downstream 237280 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00022304 lncRNA downstream 407052 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00022303 lncRNA downstream 472383 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00021666 lncRNA upstream 163432 55192172 ~ 55197372 (-) False XLOC_011131
TCONS_00022305 lncRNA upstream 163432 55192172 ~ 55202200 (-) False XLOC_011131
TCONS_00021852 lncRNA upstream 163484 55192224 ~ 55202075 (-) False XLOC_011131
TCONS_00021853 lncRNA upstream 163484 55192224 ~ 55204179 (-) False XLOC_011131
TCONS_00021854 lncRNA upstream 165312 55194052 ~ 55197716 (-) False XLOC_011131
TCONS_00021662 mRNA downstream 25492 54964737 ~ 54978981 (-) True XLOC_011127
TCONS_00021661 mRNA downstream 33196 54947768 ~ 54971277 (-) False XLOC_011127
TCONS_00021660 mRNA downstream 61939 54931706 ~ 54942534 (-) True XLOC_011126
TCONS_00021659 mRNA downstream 61941 54930747 ~ 54942532 (-) False XLOC_011126
TCONS_00021658 mRNA downstream 75660 54925437 ~ 54928813 (-) True XLOC_011125
TCONS_00021665 mRNA upstream 76805 55105545 ~ 55122776 (-) True XLOC_011130
TCONS_00021667 mRNA upstream 179658 55208398 ~ 55259199 (-) True XLOC_011132
TCONS_00021653 other downstream 217490 54785737 ~ 54786983 (-) False XLOC_011122
TCONS_00021650 other downstream 237280 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021635 other downstream 1348934 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 1354478 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 3056692 51941830 ~ 51947781 (-) True XLOC_011089

Expression Profile

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