RNA id: TCONS_00021645


Basic Information

Item Value
RNA id TCONS_00021645
length 1776
RNA type mRNA
GC content 0.60
exon number 9
gene id XLOC_011116
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 54459135 ~ 54471235 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caggaGGACAGACGCTCAGGATACTCTGCTGTTCTCCAGTTCTCAGTGTAGTGTGTGTGAGATCAGCATCGGCAGCATGTTCTCCTCCTGCGCTGGGTCTGTGTGTGCGCGTCCGcatctgtgtgtgcgtgcatctgtgtgtgtgcgtccgcTTCACCAAAGCTCCAGATCCGCTGGAGCCGCTCGACTCTTCCAGGAGATCCCGGACACCGGCAGCAACGGCTGGATGAACCTGCTGCGCTTCTGGAGGGACGGACGCTTCAGCcgcatgcacaaacacatggAGGAGTCCTTCAGACGCCTCGGGCCCATATACAGagagcACCTGGGCTCTCAGAGCAGTGTGAACATCATGCTGCCCATGGACACCGGTGAGCTGTTCCGCTCGGAGGGTCTTCACCCGCGCCGCATGACCCTGCAACCCTGGGCCACACACCGAGAGACACGCAGACACAGCAAAGGAGTCTTCCTCAAgaacgGGACGGAGTGGCGTGCTGACCGTCTGCTGCTGAACCGTGAGGTGATGGTGTCCTCGTCTGTCCACCGCTTTCTCCCGCTGCTGGATGAAGTGGCGCAGGATTTCTGCCGTTCGCTGCGGCGCCGCGTTCAGGCGGACGGGTTCGAGAAGGCGGGGCAGCACACACTGACCCTTGACCCCAGTCCTGACCTCTTCCGCTTCGCATTGGAAGCGAGCTGTCACGTTCTGTACGGCGAGCGGATTGGCCTGTTCTCCTCGTGCCCGTCTGACGAATCAGAGCGCTTCATTTCGGCTGTGGAGCGAATGCTGGCCACGACCCCCCCGCTGCTGTACCTGCCCCCCCGCCTGCTGCTGCGGCTGCGCGCCTCCCTGTGGACAACACACGCCACTGCATGGGACGACATCTTCAGCCacgcgGAGCAGCGTATCCAGCGTAGCTATCAGCGTCTGCAGGCGAGGCCGTCTGCTGCTCCAGACTGCAGCTTCCCGGGGGTTCTGGGAAAGCTGATGGAGGCGGGACAGTTATCATTAGAGCTGATCAGAGCCAACATCACTGAGCTGATGGCCGGCGGAGTTGacacgacggCCGTGCCGCTGCAATTCGCTCTCTTTGAGCTGGCGCGTAACCCTGATGTGCAGGAGTGTGTGCGCGCGCAGGTTCTGTCGTCATGGCAGCAGGCGTCTGGAGACCCTCTGAAGGCCCTGCAGGGGGCGCCGCTGCTGAAGGGGACCATCAAGGAGACACTGAGGTTGTATCCTGTGGGAATCACCGTTCAGAGGTATCCAGTCAGAGACATCGTCCTGCAGAACTACCACGTGCCGGCAGggacgCTGGTGCAGGTGTGTCTGTATCCCCTGGGTCGTTCCGCTGAGGTGTTCTCCAGGCCGGAGTGTTTCGACCCCAGCCGCTGGAGCGCAGACGCAGACGCCGGGTCTGCAGGAGGCTTCCGCTCGCTGGCGTTCGGCTTCGGCTCCAGGCAGTGTGTGGGACGCAGGATAGCAGAGAACGAGATGCAGCTGCTGCTCATGCACattCTGAGGACCTTCAAGCTGACGGTTTCGTCCACAGAAGAGCTGAGCACTAAATACACACTGATCCTGCAGCCCGAGTGTCCACCGAGAATCACcttcagcacactcacacaccAGCACTGATCCATCAGtcaatcatcaatcaatcaatcaatcaatcaatcagtcgtCAGTCGACCCCGCGGCTGTGCTTGTTCAGGAGTTCTGAATGTGGATTATCAGCTGCTGTTTCATGACAACACAATAAATCAACTGATCAAACACTC

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0006700 C21-steroid hormone biosynthetic process biological_process
GO:0071375 cellular response to peptide hormone stimulus biological_process
GO:0006704 glucocorticoid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0034650 cortisol metabolic process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070828-1 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Acts upstream of or within cortisol metabolic process. Predicted to be active in mitochondrial inner membrane. Is expressed in brain; endocrine system; and gonad.

Ensembl:

ensembl_id ENSDART00000185978

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022300 lncRNA downstream 19979 54436976 ~ 54439156 (-) True XLOC_011114
TCONS_00022299 lncRNA downstream 162691 54291662 ~ 54296444 (-) True XLOC_011111
TCONS_00022298 lncRNA downstream 163115 54291662 ~ 54296020 (-) False XLOC_011111
TCONS_00022301 lncRNA upstream 61138 54526409 ~ 54528701 (-) False XLOC_011118
TCONS_00022302 lncRNA upstream 61138 54526409 ~ 54532020 (-) False XLOC_011118
TCONS_00022303 lncRNA upstream 61138 54526409 ~ 54532090 (-) True XLOC_011118
TCONS_00022304 lncRNA upstream 129639 54594910 ~ 54597421 (-) True XLOC_011119
TCONS_00021649 lncRNA upstream 296626 54761897 ~ 54767193 (-) False XLOC_011121
TCONS_00021644 mRNA downstream 3562 54450407 ~ 54455573 (-) True XLOC_011115
TCONS_00021642 mRNA downstream 53159 54402310 ~ 54405976 (-) False XLOC_011113
TCONS_00021643 mRNA downstream 54098 54402511 ~ 54405037 (-) True XLOC_011113
TCONS_00021641 mRNA downstream 101935 54355842 ~ 54357200 (-) True XLOC_011112
TCONS_00021640 mRNA downstream 271649 54166932 ~ 54187486 (-) True XLOC_011110
TCONS_00021647 mRNA upstream 9350 54474621 ~ 54498109 (-) True XLOC_011117
TCONS_00021648 mRNA upstream 167967 54633238 ~ 54640315 (-) True XLOC_011120
TCONS_00021651 mRNA upstream 319993 54785264 ~ 54800202 (-) False XLOC_011122
TCONS_00021652 mRNA upstream 319994 54785265 ~ 54800202 (-) False XLOC_011122
TCONS_00021655 mRNA upstream 339544 54804815 ~ 54810464 (-) True XLOC_011123
TCONS_00021635 other downstream 803596 53650902 ~ 53655539 (-) True XLOC_011103
TCONS_00021634 other downstream 809140 53642820 ~ 53649995 (-) True XLOC_011102
TCONS_00021617 other downstream 2511354 51941830 ~ 51947781 (-) True XLOC_011089
TCONS_00021614 other downstream 2703629 51755392 ~ 51755506 (-) True XLOC_011087
TCONS_00021604 other downstream 3497773 50961246 ~ 50961362 (-) True XLOC_011078
TCONS_00021650 other upstream 300230 54765501 ~ 54767193 (-) True XLOC_011121
TCONS_00021653 other upstream 320466 54785737 ~ 54786983 (-) False XLOC_011122

Expression Profile

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