XLOC_000112 (rasd3)


Basic Information

Item Value
gene id XLOC_000112
gene name rasd3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9144958 ~ 9145896 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000206
aaacattgcAGGTCAGCATCTCGATGACGCTCAGATTTGCTCATCAAAAGTCTCCTCTGAGAGctgtaacttattaaattaataactgaGGGAAGATGTCTCTGTTAGTGCAGGAGCATCGGACGGTGCGCTTTGTGTTTCTGGGCGCAGCCGGGGTTGGTAAAACCGCCCTGATCACCCGCTTCTTGCAGGATCGATTCGACTCCAAATACACGCGCACGGTGGAAGAGCTTCACGCGCTCGAGTACGACACTGAAGGCGCTCGGGTGCGCATTGAGATCTTGGATACGAGCGGAAGTTATCCCTTTCCTGCGATGCGCGCTCTTTGCATCCGAACCGGGGACGCGTTTGCGCTCGTGTACGCAGCCGACGAGCCAGATTCCCTGGAGGAGGTGCAGAGACTTCGTGAGGAGATTCTGGAGCTAAAAGGAGAGAGTTTTACTGGCATCACGGTGATCGAGAACAAAGCGGACCTGTGCAGCCGGAGTCGCCAGGCCACTGCGGAGGCGATGCGCGCGGTGGAGGAGGACTGGGGCGCGGGCTTCGTGGAAACCTCCGCGCGCACCGGCGACAATGTCACAGCTGTGTTTCGGGACTTGCTTCAACAGATGAAGTTACCGAGCCGGGTGAGTCCGGCACTGCGCAGACGGACACAGACAATGTCCAGAGAGCTCACAGAGAAGCGGGAAAAGCCCCCAATGAAGAAAAACAACAGCTGCATCTTGTCTTGATGGACATATATATGAAAATGTAGTTATGCATCATACTGATGCTTAAGTGATCTGGATCAAATATAGACCCCACATAAatgttttatgtgtgtttatgctttatcattatcatttaaaGGAATTCTCTGAATGCTGTATGTCTGGTCTCTCTAAATGAGAGCTAAAGTGATCTTTTGTGAGTGAATAAATGCAAATATGTTCCAGTCAA

Function

symbol description
rasd3 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060818-9 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000058464

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000206 True 939 mRNA 0.51 1 9144958 9145896

Neighbor

gene id symbol gene type direction distance location
XLOC_000111 NA coding upstream 12468 9129386 ~ 9132490 (+)
XLOC_000110 cacng3a coding upstream 53023 9082417 ~ 9091935 (+)
XLOC_000109 BX004779.3 coding upstream 70479 9071324 ~ 9074479 (+)
XLOC_000108 prkcba coding upstream 80046 9004719 ~ 9064912 (+)
XLOC_000107 tlr2 coding upstream 156454 8984068 ~ 8988504 (+)
XLOC_000113 plk1 coding downstream 7245 9153141 ~ 9161843 (+)
XLOC_000114 chtf18 coding downstream 53135 9199031 ~ 9227204 (+)
XLOC_000115 chtf18 coding downstream 72752 9218648 ~ 9221616 (+)
XLOC_000116 BX323038.1 coding downstream 131950 9277846 ~ 9285351 (+)
XLOC_000117 uncx4.1 coding downstream 144207 9290103 ~ 9294115 (+)
XLOC_000106 NA non-coding upstream 168536 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 179019 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 554322 8587230 ~ 8590636 (+)
XLOC_000098 AL928650.2 non-coding upstream 567684 8575307 ~ 8577274 (+)
XLOC_000120 NA non-coding downstream 741059 9886955 ~ 9914630 (+)
XLOC_000121 NA non-coding downstream 800768 9946664 ~ 9951873 (+)
XLOC_000133 AL935188.1 non-coding downstream 1217824 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 1316148 10462044 ~ 10462882 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_00776177_00776812 NA coding CI01000300 null 776017 ~ 776938 (+)