CI01000112_01865388_01878028 (LUC7L3)


Basic Information

Item Value
gene id CI01000112_01865388_01878028
gene name LUC7L3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1865101 ~ 1878188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_01865388_01878028.mRNA
ATATATATGCGTGAGTTTTCTTGGACAGCACATTTATTTCCTAATGTATGCTTCCCTTTGACTTACTTTGCTCCTGTAGTAATTTGATAAAGACTCCTCATCCCGTACGCTAGATGGCGCACTAATAACGCCTTTTCCTCGAGGTGGATTATGGGTAACTTCCGCTGCGTGCTGCAGATTCTGCCATTTTGTTGTCCAGATCAGAGAGCAGGGGACGCGGTGTACGTTATTCTGTAAATGAATAATACGACTCTCTTATAGTGGATCAGAAATAGAGCCGAGGCACGATGCTTTCCGCAGCCCAGTTACTCGATGAGTTAATGGGTCGGGACCGGAACTTGGCTCCGGATGAGAAGCGCTGTAATGTTCGCTGGGACGACGAGACTGTCTGCAAATATTATCTGTGTGGCTTTTGCCCTGCTGAACTCTTCACAAACACGCGATCAGATTTGGGTCCTTGTGAAAAAATCCATGATGAAAACTTGAGGAAAATGTATGAGAAGAGCTCCCGCTTCATGAAGGAAGGGTATGAGCGGGACTTCCTGCGGTACCTGCAGAGTCTCCTGGCCGAGGTGGAGCGCAGGATTCGGAGGGGTCACGCGCGTCTCGCCCTGTCACAAGCCCAGCAGAACTCTGGGACACCGGGTCCATCTGGGAAGAACGAGGAGAAAGCGCAGGTCCTCACGGAGAAGATTGAAGAGCTTGTTGTTCAGATTGAGGAGTTGGGCTCAGAGGGCCGTGTCGAGGAGGCGCAGGGCATGATGAAGCTGGTGGAGCAGCTGAAGGAAGAGCGGGAGCAGCTTAGTTCCACTCCTTCAACGATTGAGAGCTTTGCAGCTCAGGAGAAGCAGATGGAGGTGTGTGAAGTGTGTGGCGCTTTCCTCATAGTCGGTGACGCTCAGTCCAGAGTGGACGACCATCTAATGGGCAAGCAGCATATGGGATATGCCAAAATCAAATCCACGGTGGAGGAACTGAAGGAAAAGCTGCGTCGGCGCTCGGAGGACCCAGAGAAGGATGATCGAGGGAAGAAGGAGAGGGAGGACCGGGAGCGTGAAAGGGAGGAACAGCACAAGGACTCCTCAGATGAGAAAAGGAGCAGCAGAAAGGGCTCGGTTGAGAAGTCAAATGAGCTCTCCAAGCCCGAGCCCATGGAGGCCGAGCCTCCCAAAGCGGAAGTGAACGGCACCGCCCAAGAGCTACATTCTGAAGTGCATCGTAAGTATGCACTGAAGATGGGGACTAGGCTGATGAAACGGAAGAAAGTAGAAAGAAACAAACCCAGAGGGAAAGGCCAGTGTAGCCCTGAAAAACATGCTTGGAGTTTTTTCCTAACTCTGCCTTTACTACCTCAACATGTTTACTCTATGCTCGCAATAGCAGTGCATGCTTTCAGAGCAAGATCAGCCACCTAATGTCAAAGTCTGGCCGTTTAGACGAGGGGATATCAACTCTTTCAATATTTCATGGTTTTATTTGTGTGTTTACCTTAAATCATTTTACTTACAGCTGAGCAGTTACTATTGCTGCTGCTATTGAAAATATGCAGATTTAAACCAATGATAAGAGGGTAAA

Function

symbol description
luc7l3 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor).

GO:

id name namespace
GO:0016607 nuclear speck cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_01865388_01878028.mRNA True 1575 mRNA 0.49 12 1865101 1878188

Neighbor

gene id symbol gene type direction distance location
CI01000112_01831462_01857713 NA coding upstream 6398 1831462 ~ 1858703 (+)
CI01000112_01753138_01753764 NA coding upstream 110694 1752956 ~ 1754407 (+)
CI01000112_01711753_01717045 NA coding upstream 147987 1711232 ~ 1717114 (+)
CI01000112_01534218_01550547 MGAT5B coding upstream 314225 1534218 ~ 1550876 (+)
CI01000112_01493953_01497856 NA coding upstream 366417 1493953 ~ 1498684 (+)
CI01000112_01883455_01914770 NA coding downstream 5056 1883244 ~ 1914775 (+)
CI01000112_02017278_02032299 U2AF2 coding downstream 139090 2017278 ~ 2032413 (+)
CI01000112_02060950_02068272 UNM_SA1261 coding downstream 182533 2060721 ~ 2068604 (+)
CI01000112_02109843_02114079 CDR2A coding downstream 231655 2109843 ~ 2114563 (+)
CI01000112_02207728_02210655 NA coding downstream 329502 2207690 ~ 2210957 (+)
G328826 NA non-coding upstream 55142 1796096 ~ 1809959 (+)
G328830 NA non-coding upstream 62768 1776109 ~ 1802333 (+)
G328823 NA non-coding upstream 64443 1798515 ~ 1800658 (+)
G328879 NA non-coding upstream 108564 1756188 ~ 1756537 (+)
G328878 NA non-coding upstream 109818 1754952 ~ 1755283 (+)
G328847 NA non-coding downstream 52457 1930645 ~ 1932170 (+)
G328840 NA non-coding downstream 95552 1973740 ~ 1974774 (+)
G328892 NA non-coding downstream 97532 1975720 ~ 1976198 (+)
G328852 NA non-coding downstream 103069 1981257 ~ 1983318 (+)
G328893 NA non-coding downstream 105133 1983321 ~ 1983526 (+)
G328456 NA other upstream 631983 1232022 ~ 1233118 (+)
G329125 NA other downstream 739516 2617704 ~ 2618151 (+)
G329194 NA other downstream 1042066 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 3206532 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026876 luc7l3 coding NC_007114.7 CM002887.2 58805790 ~ 58823762 (-)
bowfin (Amia calva) AMCG00013088 luc7l3 coding CM030125.1 CM030125.1 20398609 ~ 20403101 (+)