CI01000112_01883455_01914770


Basic Information

Item Value
gene id CI01000112_01883455_01914770
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1883244 ~ 1914775 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_01883455_01914770.mRNA
TTATGAAAGCGACCAAAGGACTCGCATGAGGAGGCAGGACGAGTGATGATGTTTAGCGCTTAAAGTTACAAGTTATTCGAGCAGTGCGCGCAACATGTGTTGCACTGACGCGAGTTATTTTGACAGCACGCGGAGCAGACAGACTGCGATATAGCTTTGAAAAACAATTTTGGCATTCGCAATAATACATGATATTTCTGCACATGTTAAAATGATCTCGGAGGAGAGAAGCAATCACATCTCTAAACAAGCTCTCGGCTTTCCCGTTGGGTTATTGATCCGCTCGCCCAAGAGACGCCTGGCGATGCTGGGCAGAAAGGCCAGCAACGGATCTCTACAGTCCAGCGCGTCTGACAGCACGGCTCAGTCTGTGGAGAGCACTGGAGTCAGGCAGCCGGCCAAGAGCAAGATACGCCGACACAACAACAGGCTGACCACGGTGTTTAACCGAAGTCCTGTTCTGCGAAACGGGCGGCAGGGTCAGGAGGCCAGAACCCTAGAACTGCATGCAGTGGACGACCCTGCAGAGCTGTCCAGTCAGAGAACTGTCCCAGGGATCCTTAAGATATTTGGCAGTGACATTTGTCAAGGGACCAACTATAAGAGCGTTCTGGCCACCAGTCACTCCAGTGCCAAAGAGCTGGTCAGAGAGGCTCTGGAGAGGTACTGCTTGGAAAAGGAAGACTCCAGTGCGTATGTGCTCTGCGATGTGATTGGCCGAACTGGGTTGGACCACGAATGGAAGACTGAGTGCTTTCGGGTTGTCGGTGACCATGAGAAGCCTCTCATGTTGCAGTCACTCTGGAAACCCAAGGAGGGATTCCTCAGGCGCTTCGAGATCCAGAAAAGAGCAAGTGTGGAGGCGCAAAGTGCCAAGGATACAGACACTATCACTGCAGGCCTCAATGCCCAGGCCCGAAAGCTGCAGCATGCCCGTTCGCGGGTCACCTCCCTGTTCGTTGATGGGACAAATGAGGGGGTGGATGCTCTGGCTATCTGGAGGAGTTTGAGTGACATGGATGTCTCCACTATGGGAAAAGAGACCCATAATGCACCTCAGCAGGAGGATCCAGAGGCAGAGGCTGATACAGAGGCTCACCGCCTCAACGCAGAGAAAGAGGAGACGGAAAGCAGCGACGACAACAACACACAGTACTCCATCCACCTGCCCTTTGATTTCCCATATTTCCTTCTCCTGCAAGGATACAACCACAGACAGGACTTTCTGATCTATCTGATGAGTGGGAACAGTTGTGTATTTGGCTGCTCCAGTGAATCCTCCGCTGGTAAGAATGAGGAGACCATGAAGGTGGACGTCTTACTCTTTGCCCCCGACATTCTACCTCAGCATTGCTGCGTACAGCGCCTAGACGCCACCAATGACCAAACCAAGGGTGGCAGTAAGATGCGAACCATGCTCAGACCCCTCCACAGCTCATGTGTAACACACAACGGCGTCCCCGTTGATGACGAGGTTGAGTTGTGTCCAGGTGACCTGGTGGGGCTTGGTCAGCACTATCTCTTTATGTTCAAGGACCCTACGACCTCAGGAGCCTTTCAGACCCCATCCTGGATGGCCACCCTGTGTCCCCCTGCCACGACATCACCCTGTAAATTGTGCGGGACATCCGTCAGGAGAAGGAGGACTAAAAAAATGGCCGCCCGCTGGAGGGACTTGGACGGTAGGGTGGTGTCGCTGTCCTATCAGGTGCAGCATGAAGATCAGGTCTTGGAGAAGATTGTCAATATGGTGGATCCAGGAGGGGAAGAACCCAAACTCACTCCAGCCTTTCTACTATGTCTGTGCATTCAACACTCCGCCACCAACTTTGAGTTGGTTCACCTTCGGAAATTGCTGCTCTCTATTGCCAATCAGATCCAGCTCACCATGTGGGAAAGAACAAAAGAACTCGCAGCTCTGCAACCAGACATAAGCACCAGTGATATGTCAGCAGAGCTGCATGTGTTGAACATGAAGGATCTGATCCCAGGCCTACAGCCGCTGGTGCTGTGGATGTCCAACTCCATTGAGCTGCTGCACTTCATCCAGCATGAAGTCCCTCTACTCTTAACATGGAGACAGCAGGACAGACAGGAACAGGACAAAGAATCACTGGATTGTCAGATCGAGTCCACACGTACTGCCAGTGAGGAGGCCATGACTGTCCTAGAGGAAGTCATCATGTTCACCTTCCAGCAGTGTGTCTACTATCTCACCAAAAGTATGTATGCTGTGTTACCACGGCTGCTGGATAGTAACCCTTTCTCTGAGAGCGGACAGCTGTGCATGCCTGTGGGAGTCAGCCAAATCCTGGACGTCCTAAAGGAGGCACTGCACCTGCTCAACACTTTCCTGGTGCACAGCGAGATCACCTCTCAACTGCTGACCTACCTGTTCTTCTTCACAAACGCCTCGCTCTTCAACGCGCTCATGGAGAGAGGGTCCGGAGGTGGTTTCTACCAGTGGTCTAGAGGAGTGCAGATCCGGGCCAACCTGGATTTGCTGATGGACTGGACTCAAAGCATCGGACTGGGAGATCTGGCTGCCGACTTCTTCCAGAAACTCTCTTCAGCCGTCAACCTGCTTGCAACTCCCAAAGAGACCCTGCTGCAGTCAAATCCTAGGAAAAACTGGTGTCAGATTAACAAAACAGGGTATAAGGGTGAATCTTACCAGTCCTCATGGTCCACTCTGAGAGCTGAGTTTGTTCATCTGAACCCTGCACAGCTGCATCATATGCTGAGAGAGTACAACACAGCCCGTACGTGCCCTCCATGCTGGACCCCGTCTCCAGAGGATGCAGCTGCGGCCCTCCATACCTCTAATATCCTGGAAAGTTTCGACAACCATCCTCCTCTAATCCTGCCCAGCAGCATCTTTCATCTGGAGCTGGGAAATCCCATCACAGAGCCAGGGCTGTTCCCTCCACTGCAGCATCTGCAGGACTTTATCCAGTCTCTCCCAGACAGCCAGACACAGTCTGATCATCAGCCCTCACAGGGCTCCTGCAGTATCTTGAATGAAGAGACATCATCTGAACCAATCACCTGCCAGGATTCAGAGGCAACAGATCAACACCCTGTCACCAGGACACCTCCTCAGTTTCGGGAGACTCACAGCAATCTGAGCTCATGTGAGGCCGTCCTGACCCAGAAACTCAAGAGTCTGGAGCTCCAAAACAGCTTGTCTGGAAGTACAGGCCTGGGCTACCACAAGAGTCTGGCCCTCGACCCCTCCTGCCTGCTTACGCCTCCCAACACCCCTCAGAATCTAGACCAAGCCGAGCTGGAAGCCAGCCTTCTGGAGGGGACGGCACAGCAGACAGCACGCCAGCACAGGAAAGGCAGGGTGTATTGTCTTTGGAGGCATAAGGGAGGTGCTGGTGTTGATGTGGAGTTGGGTTTGTGTGCTCTGGCTGCAGCGGGTGAAGAAGCTGGAAACCAGCCCTCCTCCTCCTCTCCAGAATGCTTTTACCACATGTAATATGT

Function

NR:

description
Ras-associated forkhead-associated dilute domain protein

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_01883455_01914770.mRNA True 3489 mRNA 0.53 16 1883244 1914775

Neighbor

gene id symbol gene type direction distance location
CI01000112_01865388_01878028 LUC7L3 coding upstream 5056 1865101 ~ 1878188 (+)
CI01000112_01831462_01857713 NA coding upstream 24541 1831462 ~ 1858703 (+)
CI01000112_01753138_01753764 NA coding upstream 128837 1752956 ~ 1754407 (+)
CI01000112_01711753_01717045 NA coding upstream 166130 1711232 ~ 1717114 (+)
CI01000112_01534218_01550547 MGAT5B coding upstream 332368 1534218 ~ 1550876 (+)
CI01000112_02017278_02032299 U2AF2 coding downstream 102503 2017278 ~ 2032413 (+)
CI01000112_02060950_02068272 UNM_SA1261 coding downstream 145946 2060721 ~ 2068604 (+)
CI01000112_02109843_02114079 CDR2A coding downstream 195068 2109843 ~ 2114563 (+)
CI01000112_02207728_02210655 NA coding downstream 292915 2207690 ~ 2210957 (+)
CI01000112_02240184_02240792 C16ORF52 coding downstream 322894 2237669 ~ 2241243 (+)
G328826 NA non-coding upstream 73285 1796096 ~ 1809959 (+)
G328830 NA non-coding upstream 80911 1776109 ~ 1802333 (+)
G328823 NA non-coding upstream 82586 1798515 ~ 1800658 (+)
G328879 NA non-coding upstream 126707 1756188 ~ 1756537 (+)
G328878 NA non-coding upstream 127961 1754952 ~ 1755283 (+)
G328847 NA non-coding downstream 15870 1930645 ~ 1932170 (+)
G328840 NA non-coding downstream 58965 1973740 ~ 1974774 (+)
G328892 NA non-coding downstream 60945 1975720 ~ 1976198 (+)
G328852 NA non-coding downstream 66482 1981257 ~ 1983318 (+)
G328893 NA non-coding downstream 68546 1983321 ~ 1983526 (+)
G328456 NA other upstream 650126 1232022 ~ 1233118 (+)
G329125 NA other downstream 702929 2617704 ~ 2618151 (+)
G329194 NA other downstream 1005479 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 3169945 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026875 si:ch73-281f12.4 coding NC_007114.7 CM002887.2 58714741 ~ 58798815 (-)