CI01000112_03192658_03204707 (MHC1ZBA)


Basic Information

Item Value
gene id CI01000112_03192658_03204707
gene name MHC1ZBA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3191661 ~ 3205032 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_03192658_03204707.mRNA
ATATATATATGTCTGTTTTAGGGAGTACACCTTCAGTACTTTTCATACTGATATTTGTATCTTTATTAACTGGTTAATTTATTTATTATTATTATTTATTTATTTTTTTACATAAAAATCAAAAGTATTTTGAAAAGTATTAATAAACTGACCTCAGCTGGTCACTATTTTCTTTTTAGAGCTGCTTTACAGCAAGTGAACTCTGTTGGCATCACTGAATCATTATTTTCCTGTTTATCCCTGTACAAGTTTAGGTTTAAGGTATAAAATGTTAGTTTAATTGCCCTTTAAAGGGACAATATTATTATTATTGCTATCTTGAATATTCTATAAAACTATATAATACTATTGAATGTCTTATTCTGTAAAATATTTTTAATGTGATTGATTTTTTTTTTTTTTTTTTTTTTTTTACATTAGTTTATTCCTTTCTGCTCATTATTTTATATTGTTATGTCACATAATACAATGCAGTGACCATTACAATCATTTTCATGGTATCAAACGGATCAGAGGATGTCTTAGAATAAATGGATCCCACATGAATACCATTATTCCACATTAATCCATTTATTATAAAACAGTTTCGGTTGTAATGTTACCTATCTTTATAAGACAAAAAAAAAAGTATTAGCCTACAGTTAGCAAACTGCATGGACAACAGTAAATGTAACAGGCAAGCAACGAACTTTTAGGCTGGAATGCTGCTTATTGTAAATATCATTAATAATGTTTTATTAAACATTTAACTTTCTGTCCCGTTGTTGTGTTTTTAAAGGCAATAAATCAATCTAGGCTGTGCACCTTTAAGGGATGTGTTGTTGATTTAACATTGACTATATCTGCCCAGATACGGAAGAAATTGTCATTCTAGATTTTCTTATTGGTTTAAATTCATCCATTTTCTGCAGTCAGATTCTGTCGTTGAAAGTGCGTGAGTTCAGACATCAGTAAACATCAGCAGAATTAGAAAGCCTAATCAAGAGATTTTTTAATCATGGGCTCGGGTGTTGCGACTAAGAGTTTTGCTTTGCTTTGTTTTTTGTTTCTCTGCGGGACTTCTCCTTCACTTCAAGCAGAAAAACGCTCCCTGTATTACATTTACACGGCCTTGTCCAAACCTGTCGATCTGCCGGGCATCCATGAATTCACTGCTATGGGTCTGCTAGATGACAGACAGATTGACTATTATAATAGCAAGGAAAAGAGAAAGATTCCCACACAGCACTGGATGAAAGAGAAAATGCAGGAGGATTACTGGGAAAAAGGCACCCAGTCAAGAAAGAGCAAAGAACAGTGGTTTAATGTGAACGTCCACATTCTGATGAACCGTATGAATGACAGTGAATCAGATGTTCATGTACTTCAGTGGAGACATGGTTGTGAAGTTGAGAGAAATGGAAATAAACTGAACTTTTTCAGAGGCATTGATGAGTACAGCTATGATGGAGATAACTTTCTGTCTTTTGATGATAAGGAGTCTCAGTGGGTTGCCCCTGTTGATGCAGCACTTCCAACCAAGAGGAAATGGGATAATGTGCCCATCCTAAACCAGTACACCAAGGGCTACCTGGAGAAAGAGTGTGTGGACTGGCTCAGCAAATTCAGAGAATATGGAGACGAGGAACTCAGAAATGGCTCTCCTCCAGATGTTTATGTGTCTGCAAAAAAGTCTACCAGTGACAAAACTAAGCTGAAACTCACCTGTCTAGCCACTGGCTTCTACCCCAAAGACGTCATGTTGATCATAAGGAAATATCGAACACCCCTGCCTGATGATGAGGTTGAATCCACAGGAGTCAGACCAAACCATGATGGAACCTTCCAGCTGAGGAAAAGTGTGGACATCAAGGAGGATGAAAAAGCTGAATATGACTGTTATGTGTCCCACAGTACTCTCAAAGGATCAATTATCAAGAAATGGGATGGAAAATGCAAAGACTGTAATGAAGGCTCTTTTATGGTTATTGGAATTGTGATTGGAGCTGTAGCTGTAGCAGCTGTTGTTCTTGGGGTCTGCGTTTACCTTTATAAGACTAAAAAAATGGTTTTCCTAAATCGGAGCAATACAAATGGAGTACCTAAACATATTAATGAAACAGACAAAACCCTTCTCCCAGGAAATAACAGCAATGGACATGTTCCCAATGGAGGGAAGTTTGTTTATCCTCTGTCTAATCAGGGAAGGTTAACAACAGAAAAAGTTTGGTCCATTGAAGAATGCAAAAAGGTACTTGGTGCTTGTATTCGGAAGAAAAATATGAAGGGCATTATCTGCTGCCACAGAGAATTTACTCTATCCATTGCACAAGAACAAATCCAACGTATTGCTAAGTTAGTAGAGCAGAACAAACAGTTGCACGCTCGAGTGTCTCGTCTCACTCAGAAGTTGGGTCGTAACAAAGCATCAACCAAAAGTGACTCAAAAGACCAACAGTCAGATGAAAGCTATCCTGACTTACAGTCTTTCTGTAGACTAGAGGATAATATCAATACTGGATTGATGGATAAAAATGTAAATGCAGTTGAAGTGTGTGGAGCGAGACAAAAGGCTCAGAGTAGGGTAAAACGGGTTGACACAGTTCCATCTGCAACCCCCATACTGCAGTTACAAGCAGTCAGTACAGCTCTAGGTCCTGAAGACATAGAAAGACTTGCTGAGAGTTTGCCATCAGTGCATAGAAATTTTTCTGAGTTTAGGAGAGAGTTGTCCAGAAAAATGAAGCTCTACGATATGTCCCTAGCTGAAGTCATCCAGCTAATGTCACAAATCTTGACAGAGTCAGAATTCAATCATTTTGAAAGTGCTTTAAATAATTCTGAGTTTCAGCATTCCAACAAAGGTGAATTGAGAGAAGGAGTTCTGAGAGTGTTACAGAACCTTGTTGGACCAAAGGTGGACTGGTCAAATATCACTAGTTGTGTACAGAAGAAGGATGAAACTGTAAGTGAGTACACTGAAAGATTTTGTCAGTCAGCTGCAGCATACAGTGGAATAGCTGACACTCCAGAGAAGGTGCTAGAGGATAATGGACCACTGGTCCGCATGTGGTTTGATGGGCTTTTATCAGAATACAGAAATGCATTGCCTTTCTTAGACCTCACATGGTCCAATGGAACCCTGCAAAACAACTTGGATTGGTTAGCTACTTGGGAAAGAGACTGATGTCAAGGCAAGAGTAAAGATTGCAGCAGCATCCTTTAAGGTCAACACAGAGAATCGACAGAAACGTAAATGTCCTAAGAGAGAGGGCAATTGTCATTACTGTGGTAAACCTGGACATTAGATGAAAGTGTGTAGGAAAAACAAAAAGAACTTAAGAGAAATTAACAATGTTACTCAGTTCCTACTCAGTCTGCTTGCTACTCTGAAGCAGCCGCTCCCCTCATCACTAAACTTATGGGGGAGCCTGCTGAGGTGTTAACCATTTGGGCTGTGAGTGCTTAATTTCCTCAGTAATTTATAACAAAGATGAAAGACTCTTTGTAAA

Function

symbol description
mhc1zba Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in gill; intestine; kidney; liver; and spleen. Human ortholog(s) of this gene implicated in several diseases, including acute porphyria (multiple); arthritis (multiple); bone marrow cancer (multiple); hemochromatosis (multiple); and liver disease (multiple). Orthologous to several human genes including AZGP1 (alpha-2-glycoprotein 1, zinc-binding); HFE (homeostatic iron regulator); and HLA-E (major histocompatibility complex, class I, E).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_03192658_03204707.mRNA True 3491 mRNA 0.38 9 3191661 3205032

Neighbor

gene id symbol gene type direction distance location
CI01000112_03112349_03117520 NA coding upstream 74074 3112349 ~ 3117587 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding upstream 85388 3099448 ~ 3106273 (+)
CI01000112_03085161_03094204 HID1 coding upstream 97255 3085161 ~ 3094406 (+)
CI01000112_02992698_02995752 NA coding upstream 194998 2989821 ~ 2996663 (+)
CI01000112_02774549_02777028 SOCS3, SOCS3A coding upstream 413030 2773456 ~ 2778631 (+)
CI01000112_03234159_03240113 MHC1ZDA, MHC1ZBA coding downstream 28013 3233045 ~ 3240113 (+)
CI01000112_03285278_03286531 STK19 coding downstream 79526 3284558 ~ 3286568 (+)
CI01000112_03344466_03359943 CYTH3, CYTH3A coding downstream 139434 3344466 ~ 3360296 (+)
CI01000112_03571702_03574425 NA coding downstream 366348 3571380 ~ 3574700 (+)
CI01000112_03608324_03621681 NA coding downstream 403292 3608324 ~ 3621688 (+)
G329277 NA non-coding upstream 93365 3097920 ~ 3098296 (+)
G329276 NA non-coding upstream 118932 3067831 ~ 3072729 (+)
G329195 NA non-coding upstream 142668 3027017 ~ 3048993 (+)
G329197 NA non-coding upstream 242497 2946342 ~ 2949164 (+)
G329192 NA non-coding upstream 260775 2927424 ~ 2930886 (+)
G329307 NA non-coding downstream 5109 3210141 ~ 3211831 (+)
G329354 NA non-coding downstream 13382 3218414 ~ 3218673 (+)
G329340 NA non-coding downstream 70532 3275564 ~ 3275886 (+)
G329334 NA non-coding downstream 96636 3301668 ~ 3302096 (+)
G329296 NA non-coding downstream 97147 3302179 ~ 3305395 (+)
G329194 NA other upstream 259772 2920254 ~ 2931889 (+)
G329125 NA other upstream 573510 2617704 ~ 2618151 (+)
G328456 NA other upstream 1958543 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1879688 5076817 ~ 5101845 (+)

Expression


Co-expression Network