CI01000112_03234159_03240113 (MHC1ZDA, MHC1ZBA)


Basic Information

Item Value
gene id CI01000112_03234159_03240113
gene name MHC1ZDA, MHC1ZBA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 3233045 ~ 3240113 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000112_03234159_03240113.mRNA
GTATAAAGATGATAGAGAAAAGTTATTAGAAGAGGTTCAGAGGAAAGAGGAAATTGAAATCAGTTTGCGATACCTGTTAAACCCAGAACAGAAAAGTAATAACAGAGCAGCGTTAATTCAATATTTGGAGAACACAGATTTAATTAATAGGATTTGAATTAAATTTTTTTTTTTTTCTTTAGGCAGAGAAGCTGAACACGCAGCGCTGGCTGTAGCATAGTTTCATTGAGAAGGGGAGGATGGGAATTGGGGTAGTGGTTTGAGTCTCTGGATCTAGTTCACAGTACGTGGCAGTAATGCACGAAATTGGTGCGATCTGCCAAAAAAAAAAGGGAAAAAGAAGAAGAAGAAATTGTCATTCTTCATTTTCTTATTGGTTAAAAAATTCATCCGCCATAGCATAAGAAGCCATAAAAAACATTGACATTAATTTAATTGTTAATCTAAGTAAGAATGAAATCAAGAGTATTATTAAGAAAGGGTTGAAGGAAAGGTGGCAATAACAATGGGATAAGGAGAAGAAAGGTTGATGGTTTTACAGAATTCAAAGAAAAGTGGGAGAGATGAGGTATGCAGGGAAAAACAGAAGAGAGGAGATAATTATATCAAGGATGAGATTTGGACATACAAGACTAAACAGTACACTTTATAAAATGGGTAAACATGAAACAGGAAGGTGTGAATTTTGTGGGCAAGAAGAAACAGTGGAACATGTTATGATATACTGTCAGAAATATGAGACTGAAAGAAGGATTTTAATGCAAAATTTAGCAAAAATAAAAATGCAATTTATACTAGGAGATATTTTACAAAATAATTCGGGAAATTAATGTTATAGTTTTATTTTTCACTATCTTAAAATGGCTAATTTGTGGGAGAGATTATAAAAAAGGGAGGGATTAAGTCATTTTAATCCACACTCCATACCAGTGGTGGGGGTAATACATCATTTTGTTGTTTGTCAACCGCCAATAAACCTCAAAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGGAAGAGATTCATCCGCCATTTTCTGTCGTTGGAAGTTGGTGAGTTCAGACATCAGTAAACATCAGCAGATTTAGAAAGCCTAATCAAGAGATTTTTAATCATGGGCTCGGGTGTCGCGACCAAGAGTTTTGCTCTGCTTTGTCTTTTGTTTCTCTGCGGGACTTCTCCTTCACTTCAAGCAGAAAAACACTCCCTGTATTACATTTACACGGCCTTGTCCAAACCCGTCGATCTGCCGGGCATCCATGAATTCACTGCTATGGGTCTGCTAGATGACAGACAGATTGACTATTATAATAGCAAGGATAAGAGAAAGATTCCCACACAGCAGTGGATGAAAGAGAAAATGCAGGAGGATTACTGGGAAAAAGGCACCCAGTCAAGAAAGAGCAAAGAACAGTGGTTTAATGTGAACGTCCACATTCTGATGAACCGTATGAAAGATAATGAATCAGATGTTCATGTACTTCAGTGGAGACATGGTTGTGAAGTTGAGGGAAATGAACCTTTTTGGAAGTTTTCCAAAGGCATTGATGAGTACAGCTATGATGGTGATAACTTTCTGTCTTTTGATGATAAGGAGTCTCAGTGGGTTGCCCCCGTTGATGCAGCACTTCCAACCAAGAGAAAATGGGATAATGTGCCCATCCTGAACCAGTACACCAAGGGCTACCTGGAGAAAGAGTGTGTGGACTGGCTCAACAAATTCAGAGAATATGGAGACGAGGAACTCAGAAATGGCTCTCCTCCAGATGTTTATGTGTCTGCAAAAAAGTCTACCAGTGACAAAACTAAGCTGAAACTCACCTGTCTAGCCACTGGCTTCTACCCCAAAGACGTCATGTTGGTCATAAGGAAATATCGAACATCCCTGTCTAATGATGAGGTTGAATCCACAGGAGTCAGACCAAACCATGATGGAACCTTCCAGCTGAGGAAAACTGTGGATATTAAGGAGGATGAAAAAGCTGAATATGACTGTTATGTGTCCCACAGTACTCTCAAAGAACCAATCATTGAGAAATGGG

Function

symbol description
mhc1zba Predicted to be involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in gill; intestine; kidney; liver; and spleen. Human ortholog(s) of this gene implicated in several diseases, including acute porphyria (multiple); arthritis (multiple); bone marrow cancer (multiple); hemochromatosis (multiple); and liver disease (multiple). Orthologous to several human genes including AZGP1 (alpha-2-glycoprotein 1, zinc-binding); HFE (homeostatic iron regulator); and HLA-E (major histocompatibility complex, class I, E).
mhc1zda Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; intestine; kidney; liver; and spleen.

GO:

id name namespace
GO:0019882 antigen processing and presentation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000112_03234159_03240113.mRNA True 2042 mRNA 0.39 4 3233045 3240113

Neighbor

gene id symbol gene type direction distance location
CI01000112_03192658_03204707 MHC1ZBA coding upstream 28013 3191661 ~ 3205032 (+)
CI01000112_03112349_03117520 NA coding upstream 115458 3112349 ~ 3117587 (+)
CI01000112_03100235_03105799 USH1G, USH1GA coding upstream 126772 3099448 ~ 3106273 (+)
CI01000112_03085161_03094204 HID1 coding upstream 138639 3085161 ~ 3094406 (+)
CI01000112_02992698_02995752 NA coding upstream 236382 2989821 ~ 2996663 (+)
CI01000112_03285278_03286531 STK19 coding downstream 44445 3284558 ~ 3286568 (+)
CI01000112_03344466_03359943 CYTH3, CYTH3A coding downstream 104353 3344466 ~ 3360296 (+)
CI01000112_03571702_03574425 NA coding downstream 331267 3571380 ~ 3574700 (+)
CI01000112_03608324_03621681 NA coding downstream 368211 3608324 ~ 3621688 (+)
CI01000112_03653384_03730444 NA coding downstream 413271 3653384 ~ 3730448 (+)
G329354 NA non-coding upstream 14372 3218414 ~ 3218673 (+)
G329307 NA non-coding upstream 21214 3210141 ~ 3211831 (+)
G329277 NA non-coding upstream 134749 3097920 ~ 3098296 (+)
G329276 NA non-coding upstream 160316 3067831 ~ 3072729 (+)
G329195 NA non-coding upstream 184052 3027017 ~ 3048993 (+)
G329340 NA non-coding downstream 35451 3275564 ~ 3275886 (+)
G329334 NA non-coding downstream 61555 3301668 ~ 3302096 (+)
G329296 NA non-coding downstream 62066 3302179 ~ 3305395 (+)
G329339 NA non-coding downstream 66475 3306588 ~ 3306879 (+)
G329373 NA non-coding downstream 136168 3376281 ~ 3384378 (+)
G329194 NA other upstream 301156 2920254 ~ 2931889 (+)
G329125 NA other upstream 614894 2617704 ~ 2618151 (+)
G328456 NA other upstream 1999927 1232022 ~ 1233118 (+)
CI01000112_05076817_05101845 NA other downstream 1844607 5076817 ~ 5101845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location