G327960


Basic Information

Item Value
gene id G327960
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1021579 ~ 1022652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU372767
CCCCACCATAACATTGGTCCTTGTATAATGTGCCAGGGAGTTAGTTGGAGGAGATTTTTAAGAAGTAAACATGTATGTTTACAAGGACTTTTAACAAGGACATAATCAGTCACTAAGACAACTAATGCCAGGTACACACTACATGAGTTTAGCCCTGATTTTTTGTGGAACAGGCAGTTTTGTGGAAATCGCAGACAAATGCCCAAAATCAGAGGCAAATTGATGCTCGTTCACGTAACAATCCTGTGTATTATCAAAAACGTGATCTGAGAGAAGCACAGATGCATCACCAAAGCCTGTGATATAATTAGCATGCTAAATATCTGGACCTGTCTACTGCAGTGTGAAATGTATTTTGACTGGAAATTGCATAGACAACAAACGACCTACACAGCTAATGAGAGAGCAAGATACAGAGCAAGGGAAAGTTCAGAGGGAGAAGTCATAGACCTACTAGTCTCAGCCTCAGACGTCACGCCCACAGACTGTTGGCTGAACATCTGATGCATATGGCACACTTATCTGGAAACACTTCAGTAGTTTCGAAGTCGTCATCTGGTTGGTTGAATTATACAGGATGTCCGGGAGACACGTGTGTCGCGTTCTTTAACGGTCCGCCTGGAAACAAATGGTGTGGCGCTAATCCCCCTCGTGAAAGAAGAAAGCGGTCGTGTTTACAAGCGCTTACCATGATCAACTAAATGCTGGATTTTCAAAAGTATGTGAAGTTCGTGACTCCATTTGTGGCTGTAAACTTGCACAACGTTCTTGAATTAATAATTTATAGATGTACGCTGGGACATTATTGCAGGGACATCGACTTTACATTTTCACGCCCCTAAACATGATGCGGAACAAAACAAACTGTGATTGGTGTTACATGTCAGTCAAACATCCTCTTGGGCGGTTCTTGGCCAATGAAAGCTGCGATAGAGTCTAGACCTTCTGCCATCAGTCTGAAGGTCTGGCTAAGTGAGACTATAGACCTTCTGCAAGCAACCATTCTCTTCTTCATATACTTCTTTTTTCCTTTTCTTCTTCATGTTCGCTGCAACTCAGCACACAGCCAACTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372767 True 1074 lncRNA 0.43 1 1021579 1022652

Neighbor

gene id symbol gene type direction distance location
CI01000112_00975908_00994568 RHOT1B, RHOT1, RHOT1A coding upstream 25514 975908 ~ 996065 (+)
CI01000112_00967726_00973214 NA coding upstream 48100 967726 ~ 973479 (+)
CI01000112_00943876_00960636 NA coding upstream 60943 943876 ~ 960636 (+)
CI01000112_00931318_00942127 SUZ12B, SUZ12 coding upstream 79194 931147 ~ 942385 (+)
CI01000112_00857771_00878662 RAB11FIP4 coding upstream 141953 856598 ~ 879626 (+)
CI01000112_01304699_01321467 NA coding downstream 281651 1304303 ~ 1321708 (+)
CI01000112_01473681_01484126 NA coding downstream 450705 1473357 ~ 1484634 (+)
CI01000112_01493953_01497856 NA coding downstream 471301 1493953 ~ 1498684 (+)
CI01000112_01534218_01550547 MGAT5B coding downstream 511566 1534218 ~ 1550876 (+)
CI01000112_01711753_01717045 NA coding downstream 688580 1711232 ~ 1717114 (+)
G327959 NA non-coding upstream 22 1021336 ~ 1021557 (+)
G327958 NA non-coding upstream 12846 1008519 ~ 1008733 (+)
G327957 NA non-coding upstream 15629 1005676 ~ 1005950 (+)
G327955 NA non-coding upstream 16871 1004466 ~ 1004708 (+)
G327954 NA non-coding upstream 17469 1003910 ~ 1004110 (+)
G327980 NA non-coding downstream 35641 1058293 ~ 1064734 (+)
G327961 NA non-coding downstream 79557 1102209 ~ 1108997 (+)
G328438 NA non-coding downstream 187027 1209679 ~ 1210009 (+)
G328459 NA non-coding downstream 211954 1234606 ~ 1234890 (+)
G328495 NA non-coding downstream 251951 1274603 ~ 1274834 (+)
G328456 NA other downstream 209370 1232022 ~ 1233118 (+)
G329125 NA other downstream 1595052 2617704 ~ 2618151 (+)
G329194 NA other downstream 1897602 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4062068 5076817 ~ 5101845 (+)

Expression


Co-expression Network