G328438


Basic Information

Item Value
gene id G328438
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1209679 ~ 1210009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU373309
ACTGGGACGACCATGGCAGAAGCTTCATTTTGTGCTCAGGGACAAATTTTTGTGTTGGTTTTGATGTTTGTTTTGGATCACTGTCCTGTTGGAAGATCCAACCACGGCCCATTATATGACTTCTAGCAGGGACAGTCAGGTTTTGATTTTTTATCTGTTGGTATTTGATAGAATGTCCAGGACCTGCAGCAGAAAAATAGGCCCACAACTTTAAAGATACAGCAGTATATTTCATTGTACACATGGGGTACTTTTTACCCCTGTGTGCACCAAACCCATCTTGAGTGTTTGCTGTTAAAAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373309 True 304 lncRNA 0.41 2 1209679 1210009

Neighbor

gene id symbol gene type direction distance location
CI01000112_00975908_00994568 RHOT1B, RHOT1, RHOT1A coding upstream 213614 975908 ~ 996065 (+)
CI01000112_00967726_00973214 NA coding upstream 236200 967726 ~ 973479 (+)
CI01000112_00943876_00960636 NA coding upstream 249043 943876 ~ 960636 (+)
CI01000112_00931318_00942127 SUZ12B, SUZ12 coding upstream 267294 931147 ~ 942385 (+)
CI01000112_00857771_00878662 RAB11FIP4 coding upstream 330053 856598 ~ 879626 (+)
CI01000112_01304699_01321467 NA coding downstream 94294 1304303 ~ 1321708 (+)
CI01000112_01473681_01484126 NA coding downstream 263348 1473357 ~ 1484634 (+)
CI01000112_01493953_01497856 NA coding downstream 283944 1493953 ~ 1498684 (+)
CI01000112_01534218_01550547 MGAT5B coding downstream 324209 1534218 ~ 1550876 (+)
CI01000112_01711753_01717045 NA coding downstream 501223 1711232 ~ 1717114 (+)
G327961 NA non-coding upstream 100682 1102209 ~ 1108997 (+)
G327980 NA non-coding upstream 144945 1058293 ~ 1064734 (+)
G327960 NA non-coding upstream 187027 1021579 ~ 1022652 (+)
G327959 NA non-coding upstream 188122 1021336 ~ 1021557 (+)
G327958 NA non-coding upstream 200946 1008519 ~ 1008733 (+)
G328459 NA non-coding downstream 24597 1234606 ~ 1234890 (+)
G328495 NA non-coding downstream 64594 1274603 ~ 1274834 (+)
G328504 NA non-coding downstream 76088 1286097 ~ 1286491 (+)
G328506 NA non-coding downstream 78065 1288074 ~ 1288428 (+)
G328511 NA non-coding downstream 89338 1299347 ~ 1299654 (+)
G328456 NA other downstream 22013 1232022 ~ 1233118 (+)
G329125 NA other downstream 1407695 2617704 ~ 2618151 (+)
G329194 NA other downstream 1710245 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 3874711 5076817 ~ 5101845 (+)

Expression


Co-expression Network