G327980


Basic Information

Item Value
gene id G327980
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1058293 ~ 1064734 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU372790
CAAAGTATCTTCAGATACGTTTTGCATTTCAATAAAAAAAACAACTCAGAAGTCTCATAGAAACAGTAGAGAATAATTATTTCTTTTAATAATCTTCAATAGTAAAGTTCATTCTAACCTCTGCTATAGTGATGACCAGCATAAGCCATGGTGGTGGACAGTAGGTGTAACTGTCAAAGTACCATTTGCGGTCCACCTCTCTGGGCAAAGTTTCATAAGCAACATGACGCACGAGTCTCCGAGACAGACCCAAGCCTACTTCCTCTCTCAGTGCGGAATTCCTGAGCTGCCGACTCCCCTGCAGGATCGCTCGACGGAAACTGTTCGAACGTTTGTTGCTCATCAGGTTAACAAAATCCTGGTAGCAGATCTTTCCGTCAGCATTTCCGTCAGCCAGGGCAAGAAGAACCTCCAGCTTGTGAGGGTCCAGTTCTGATCCATGAGCCGCAAGGAGATCTCGGAAACGCTCAGTACTGATGAAGCCTGAATTTTCTGGGTCATACTTCTCTTGAAAGACTTCTGATAACTTCTGTGTGCCATTAGTTTTCATGTCGTGTTCTATCCCTGTCCCACACTGTCCCCACAGAGGGAGAGAGTGAGAAGCTGGAGACAGAGACTAATCTCTACCCATAGGGGATTTACAGTTCAGTGCAGACCCCCACCACCGGAACACACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372790 True 677 lncRNA 0.46 3 1058293 1064734

Neighbor

gene id symbol gene type direction distance location
CI01000112_00975908_00994568 RHOT1B, RHOT1, RHOT1A coding upstream 62228 975908 ~ 996065 (+)
CI01000112_00967726_00973214 NA coding upstream 84814 967726 ~ 973479 (+)
CI01000112_00943876_00960636 NA coding upstream 97657 943876 ~ 960636 (+)
CI01000112_00931318_00942127 SUZ12B, SUZ12 coding upstream 115908 931147 ~ 942385 (+)
CI01000112_00857771_00878662 RAB11FIP4 coding upstream 178667 856598 ~ 879626 (+)
CI01000112_01304699_01321467 NA coding downstream 239569 1304303 ~ 1321708 (+)
CI01000112_01473681_01484126 NA coding downstream 408623 1473357 ~ 1484634 (+)
CI01000112_01493953_01497856 NA coding downstream 429219 1493953 ~ 1498684 (+)
CI01000112_01534218_01550547 MGAT5B coding downstream 469484 1534218 ~ 1550876 (+)
CI01000112_01711753_01717045 NA coding downstream 646498 1711232 ~ 1717114 (+)
G327960 NA non-coding upstream 35641 1021579 ~ 1022652 (+)
G327959 NA non-coding upstream 36736 1021336 ~ 1021557 (+)
G327958 NA non-coding upstream 49560 1008519 ~ 1008733 (+)
G327957 NA non-coding upstream 52343 1005676 ~ 1005950 (+)
G327955 NA non-coding upstream 53585 1004466 ~ 1004708 (+)
G327961 NA non-coding downstream 37475 1102209 ~ 1108997 (+)
G328438 NA non-coding downstream 144945 1209679 ~ 1210009 (+)
G328459 NA non-coding downstream 169872 1234606 ~ 1234890 (+)
G328495 NA non-coding downstream 209869 1274603 ~ 1274834 (+)
G328504 NA non-coding downstream 221363 1286097 ~ 1286491 (+)
G328456 NA other downstream 167288 1232022 ~ 1233118 (+)
G329125 NA other downstream 1552970 2617704 ~ 2618151 (+)
G329194 NA other downstream 1855520 2920254 ~ 2931889 (+)
CI01000112_05076817_05101845 NA other downstream 4019986 5076817 ~ 5101845 (+)

Expression


Co-expression Network