G328686


Basic Information

Item Value
gene id G328686
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000112
NCBI id null
chromosome length 5247617
location 1457623 ~ 1458490 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU373577
TGTGTCCCAATTCAGGGGTTGTGCACTTCGGAGTGCATGAAAGGGGTGGGGCTTTGAAATGGAGGGTTGCCAGGTCTGCACAACAAAACCATCCCAAAAGTAGCGTAATCACAGCACAAGTGTAAAAGTATCCCAATCCCAGACGTGGCAACAATGAGCCGAGCGTTGTTACATGGCTAGCGGCTGTGTGGCAGCTTACAGTTGACGTTTGTGTGTGCATTTTAAAGTTTTCACTGCCGGCGACGACGGGACACTGGACCATATGAACAGAACTCCTGTCGTCACCGGCGCGCAATGAATTGTGGGATAGGGTAGACCGCGAAGTGTCTTGAGATGGACGCTTCGTTCCACGGGGAAACGGAGAGGGCCCATTTGAAGTCGCTCTCGAATTACGTCAGCCCTCCTCGCGCCGCCTCGCACTTCAAAGGCCGCTTTCCCCCCCAGTTTTCTCAAGAACAGAATACAGTGCATAAAATGGGTACATTAAAACGTGTCGATATAAATATTATTTAAATGTCACTTTGTCAATGAAACAGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU373577 True 539 lncRNA 0.50 2 1457623 1458490

Neighbor

gene id symbol gene type direction distance location
CI01000112_01437714_01440420 NA coding downstream 17115 1437457 ~ 1440508 (-)
CI01000112_01367862_01375489 NA coding downstream 80249 1367451 ~ 1377374 (-)
CI01000112_01324078_01345821 SEPT9, SEPT9A, SEPT9B coding downstream 111802 1324078 ~ 1345821 (-)
CI01000112_01120464_01124295 NA coding downstream 333328 1120087 ~ 1124295 (-)
CI01000112_01092142_01094413 NA coding downstream 363142 1091672 ~ 1094481 (-)
CI01000112_01486968_01488917 NA coding upstream 26881 1485371 ~ 1489501 (-)
CI01000112_01517833_01520418 NA coding upstream 59238 1517728 ~ 1520546 (-)
CI01000112_01772132_01776695 PRPSAP1 coding upstream 313257 1771747 ~ 1776853 (-)
CI01000112_01953215_01962043 NA coding upstream 494668 1953158 ~ 1962751 (-)
CI01000112_01967374_01971965 NA coding upstream 508568 1967058 ~ 1971965 (-)
G328677 NA non-coding downstream 78181 1377729 ~ 1379442 (-)
G328654 NA non-coding downstream 151898 1305447 ~ 1305725 (-)
G328650 NA non-coding downstream 157973 1299347 ~ 1299650 (-)
G328643 NA non-coding downstream 169768 1287625 ~ 1287855 (-)
G328640 NA non-coding downstream 180438 1276933 ~ 1277185 (-)
G328715 NA non-coding upstream 10823 1469313 ~ 1469515 (-)
G328709 NA non-coding upstream 35479 1493969 ~ 1494368 (-)
G328717 NA non-coding upstream 36567 1495057 ~ 1495280 (-)
G328718 NA non-coding upstream 37172 1495662 ~ 1496070 (-)
G328719 NA non-coding upstream 39278 1497768 ~ 1498418 (-)
G328642 NA other downstream 170665 1286655 ~ 1286958 (-)
G328641 NA other downstream 171099 1286092 ~ 1286524 (-)
CI01000112_00810157_00821637 TRIM25 other downstream 588987 808545 ~ 821932 (-)
CI01000112_00792970_00793455 CQ067, CLG09H17ORF67, C9H17ORF67 other downstream 662677 792271 ~ 793455 (-)
G328332 NA other downstream 675839 780164 ~ 781784 (-)
G329587 NA other upstream 171286 1629776 ~ 1633322 (-)
G329559 NA other upstream 339526 1791084 ~ 1809739 (-)
G329569 NA other upstream 533176 1991666 ~ 1997859 (-)
G329672 NA other upstream 558214 2016704 ~ 2019453 (-)
CI01000112_03068505_03072256 NA other upstream 1608830 3067320 ~ 3072879 (-)

Expression


Co-expression Network