CI01000113_02193825_02200601 (TUBB4A, TUFM)


Basic Information

Item Value
gene id CI01000113_02193825_02200601
gene name TUBB4A, TUFM
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2193355 ~ 2201275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_02193825_02200601.mRNA
AGATGCTGCTGCACAACGGCGTGCTGAAACCGTCGACGCGTAATGACGTCGCGAACGTTACCGTAATGATTTTGGATCAAGGGATATAATAAATAATTTACATAATTGAAACTGTGTAAACCCGAAAGTTATATTAGCAATTTAAATTTATTATGTTATATTATATTATAATATTACTATGCATTACATGGCTATACAATAGCTAATAATAATTTGGTATGTATATTTTCCATCAAAATTCCATGGTTACTGCAGGTGTTGTACTAGCGTTAAGTCATACAACATGTGAACTCTCCGTCAGACAGTGCAGGCTGATTTTTTATTTTTATTTTTGTTTTTTTTTTTAAGGTTTTTATTGCAGTACGATAATTGAGTAACTTTAGTATTTTGCCGAAACTATGGTTACCACGGCAATTTTAGTAAGATAATATGCTTAAAAAAACAAAAGCACATTTTCACATGTTTTCAGCGCTTTTTGTTTTTAGTTTGTTCCAAAAGTTTATGTATAATATAAAGTCATTTATGAAACGAAAGGAATTTTTTTTTTTTTTTTTTGCAAAGAGGCCACTTAAAATCCGCTCCCATTAGAATGGTTACGGTACAGTACAAACGCGTCCAGTGTTGATGGCGTATGTGTATTTCTCCGCGCACGCGTATTTCCCAGTGTCCGCAAAATGGCTGCGCTCGTGAGCGTTCGCGCGTGCCTCTCCGCTCTTCAGTTGACCTCCCCGAGTTTACTGCACAGCTCATATAAACTGCTTGCAGTTCCTCTAAGTCGGAGAAATTTCGCAGCAGACGCGAAGAAGGTTTTCTCTCGTGATAAACCCCATTTGAACATCGGGACTATCGGTCATGTAGACCACGGCAAAACCACGCTGACCGCTGCCATTACCAAAGTCCTAGCCGAGGCCGGTGGTGCACGTTATAAGACGTATGAGGATATTGACAATGCTCCTGAAGAGAAGGCTCGAGGAATCACCATAAACGCCTCACATGTGGAATACACCACCGCCAACAGACACTACGCTCACACAGACTGCCCCGGTCATGCCGACTATGTCAAGAACATGATCACAGGCACATCTCAGATGGATGGCTGCATCTTAGTGGTGGCGGCGACCGACGGTCAGATGCCACAGACGCGTGAGCACCTCCTGCTGGCGCGGCAGATCGGCGTGGAGCACGTGGTGGTGTTCGTGAACAAGGCCGATGCAGTGGACGACAAAGAGATGCTGGACCTGGTGGAGCTGGAGATCAGAGAGTTGCTCACAGAGTTCGGCTACGATGGCGAAAACACACCAGTTGTTATTGGATCGGCACTCTGTGCTCTGGAGAACAGACAGCCGGAGCTGGGCGTCGACTCCATTATGAAGCTTTTGGAGGTGGTAGATTCTTTTATTCCTTTGCCAAAGAGAGATCTGGATAAACCATTCCTGCTGCCCATAGAGGCCGTCTATTCTATTCCAGGTCGTGGTACTGTGGTCACTGGCACGCTAGAGCGAGGAGTGATCAAGAAAGGAGATGAATGTGAATTTCTCGGACACAATCGTTCATTTAAGTCCGTCATCACTGGTATTGAGATGTTCCATCAGTCGCTGGACCGGGCTGAGGCGGGCGATAACATGGGTGCTCTAGTTCGCGGTCTGAAGAGGGAGGATGTCAGGAGAGGCATGGTGATGTGCAAACCTGGATCCATCCAGCCACACCAGAAGATCAAAGCTCAGGTCTATGTTCTGAGCAAGGAGGAGGGCGGCAGGCACAAACCGTTCTGCACAAACTTCATGCCTATCATGTTCTCTCACACCTGGGACATGGCCTGTCTAGTAGAGCTGCTACCTGGGAAAGAGATGGTGATGCCAGGAGAGGACACATCTATAATCCTGGCCCTCAGACAGCCTATGGCTCTCGACAAAGGCCAAAGGTTCACCCTCAGGGACGGCAACCAAACCATCGGCACAGGCCTGGTCACAGAAATCCTCACCATGACAGAGGACGACAAGTACAACTGGGGCTGAGAGACCTTATGAAAGAGGAAACTCTTTGAGAATTTGGTGTCTGAAGCCTTTTTGGACTGAAGTTCTAGAAATTACTCTAGAGTTGAATTAAGGCCCTGTTTATTGCAAAATGAAATGTTTGCTAAGGAGAATGACTATGTCCTTATTGATAATGTCTTCGCAAGCCCTTAAAATATGTGCCCACCAATTTTCTGCATAAAGAAACAAATATCGCTCCGATCAGAAATCGAACATCGTCATGGAATAATTTGTCCGTTTTACGTCAAAATATTTAAAACATGCTCCGCTTTCATTATCCTCTGTCCCATCCGAGCAGTTCACAAGGAGAAAAATAGTACTTTTGTTAAAGCTTCCCAATTTACACTGTACATGGCTCTTTGTTGCATGCCGTTCATCTACAGACACACATTGGATTCTTTTCCTCTCTGGTTTCCAGTCATCTGTCTAAAAAATGTGGCTAATGTAATAAA

Function

symbol description
tufm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; optic tectum; pectoral fin bud; and segmental plate. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 4. Orthologous to human TUFM (Tu translation elongation factor, mitochondrial).
tubb4a Enables calcium ion binding activity. Involved in negative regulation of microtubule polymerization. Located in axoneme and microtubule. Implicated in hypomyelinating leukodystrophy 6 and torsion dystonia 4.

GO:

id name namespace
GO:0070125 mitochondrial translational elongation biological_process

KEGG:

id description
K02358 tuf, TUFM; elongation factor Tu

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_02193825_02200601.mRNA True 2485 mRNA 0.45 10 2193355 2201275

Neighbor

gene id symbol gene type direction distance location
CI01000113_02170894_02179511 AMDHD2 coding downstream 11936 2170761 ~ 2181419 (-)
CI01000113_02159290_02165087 SLC25A19 coding downstream 28268 2158710 ~ 2165087 (-)
CI01000113_02136165_02143106 NA coding downstream 50249 2135324 ~ 2143106 (-)
CI01000113_02127709_02131244 DHYS, DHPS coding downstream 62111 2127209 ~ 2131244 (-)
CI01000113_02007178_02015572 NA coding downstream 177520 2007178 ~ 2015835 (-)
CI01000113_02334123_02335356 NA coding upstream 132236 2333511 ~ 2335356 (-)
CI01000113_02348726_02354574 GCDHB, GCDH.L, GCDHA, GCDH coding upstream 147331 2348606 ~ 2354574 (-)
CI01000113_02356565_02370009 NA coding upstream 155290 2356565 ~ 2370009 (-)
CI01000113_02479865_02481505 NA coding upstream 277542 2478817 ~ 2483526 (-)
CI01000113_02491883_02493061 NFIL3-6 coding upstream 289378 2490653 ~ 2493575 (-)
G332656 NA non-coding downstream 34994 2156517 ~ 2158361 (-)
G332821 NA non-coding downstream 46855 2146202 ~ 2146500 (-)
G332820 NA non-coding downstream 47614 2144904 ~ 2145741 (-)
G332638 NA non-coding downstream 74209 2118370 ~ 2119146 (-)
G332650 NA non-coding downstream 75105 2117936 ~ 2118250 (-)
G332866 NA non-coding upstream 88373 2289648 ~ 2290022 (-)
G332871 NA non-coding upstream 97194 2298469 ~ 2298893 (-)
G332872 NA non-coding upstream 102991 2304266 ~ 2330958 (-)
G332894 NA non-coding upstream 212434 2413709 ~ 2419211 (-)
G332898 NA non-coding upstream 227583 2428858 ~ 2455150 (-)
G332649 NA other downstream 44797 2147214 ~ 2148558 (-)
G332160 NA other downstream 1746518 390227 ~ 446837 (-)
G332210 NA other downstream 2143870 47990 ~ 49485 (-)
G332837 NA other upstream 49570 2250845 ~ 2251213 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026189 tufm coding NC_007114.7 CM002887.2 13582019 ~ 13599482 (-)
bowfin (Amia calva) AMCG00012246 LOC106606385,LOC102779737,LOC106597183,LOC107550235,LOC107550268 coding CM030138.1 CM030138.1 13882244 ~ 13885130 (+)