RNA id: CI01000113_02193825_02200601.mRNA


Basic Information

Item Value
RNA id CI01000113_02193825_02200601.mRNA
length 2485
RNA type mRNA
GC content 0.45
exon number 10
gene id CI01000113_02193825_02200601
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2193355 ~ 2201275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGCTGCTGCACAACGGCGTGCTGAAACCGTCGACGCGTAATGACGTCGCGAACGTTACCGTAATGATTTTGGATCAAGGGATATAATAAATAATTTACATAATTGAAACTGTGTAAACCCGAAAGTTATATTAGCAATTTAAATTTATTATGTTATATTATATTATAATATTACTATGCATTACATGGCTATACAATAGCTAATAATAATTTGGTATGTATATTTTCCATCAAAATTCCATGGTTACTGCAGGTGTTGTACTAGCGTTAAGTCATACAACATGTGAACTCTCCGTCAGACAGTGCAGGCTGATTTTTTATTTTTATTTTTGTTTTTTTTTTTAAGGTTTTTATTGCAGTACGATAATTGAGTAACTTTAGTATTTTGCCGAAACTATGGTTACCACGGCAATTTTAGTAAGATAATATGCTTAAAAAAACAAAAGCACATTTTCACATGTTTTCAGCGCTTTTTGTTTTTAGTTTGTTCCAAAAGTTTATGTATAATATAAAGTCATTTATGAAACGAAAGGAATTTTTTTTTTTTTTTTTTGCAAAGAGGCCACTTAAAATCCGCTCCCATTAGAATGGTTACGGTACAGTACAAACGCGTCCAGTGTTGATGGCGTATGTGTATTTCTCCGCGCACGCGTATTTCCCAGTGTCCGCAAAATGGCTGCGCTCGTGAGCGTTCGCGCGTGCCTCTCCGCTCTTCAGTTGACCTCCCCGAGTTTACTGCACAGCTCATATAAACTGCTTGCAGTTCCTCTAAGTCGGAGAAATTTCGCAGCAGACGCGAAGAAGGTTTTCTCTCGTGATAAACCCCATTTGAACATCGGGACTATCGGTCATGTAGACCACGGCAAAACCACGCTGACCGCTGCCATTACCAAAGTCCTAGCCGAGGCCGGTGGTGCACGTTATAAGACGTATGAGGATATTGACAATGCTCCTGAAGAGAAGGCTCGAGGAATCACCATAAACGCCTCACATGTGGAATACACCACCGCCAACAGACACTACGCTCACACAGACTGCCCCGGTCATGCCGACTATGTCAAGAACATGATCACAGGCACATCTCAGATGGATGGCTGCATCTTAGTGGTGGCGGCGACCGACGGTCAGATGCCACAGACGCGTGAGCACCTCCTGCTGGCGCGGCAGATCGGCGTGGAGCACGTGGTGGTGTTCGTGAACAAGGCCGATGCAGTGGACGACAAAGAGATGCTGGACCTGGTGGAGCTGGAGATCAGAGAGTTGCTCACAGAGTTCGGCTACGATGGCGAAAACACACCAGTTGTTATTGGATCGGCACTCTGTGCTCTGGAGAACAGACAGCCGGAGCTGGGCGTCGACTCCATTATGAAGCTTTTGGAGGTGGTAGATTCTTTTATTCCTTTGCCAAAGAGAGATCTGGATAAACCATTCCTGCTGCCCATAGAGGCCGTCTATTCTATTCCAGGTCGTGGTACTGTGGTCACTGGCACGCTAGAGCGAGGAGTGATCAAGAAAGGAGATGAATGTGAATTTCTCGGACACAATCGTTCATTTAAGTCCGTCATCACTGGTATTGAGATGTTCCATCAGTCGCTGGACCGGGCTGAGGCGGGCGATAACATGGGTGCTCTAGTTCGCGGTCTGAAGAGGGAGGATGTCAGGAGAGGCATGGTGATGTGCAAACCTGGATCCATCCAGCCACACCAGAAGATCAAAGCTCAGGTCTATGTTCTGAGCAAGGAGGAGGGCGGCAGGCACAAACCGTTCTGCACAAACTTCATGCCTATCATGTTCTCTCACACCTGGGACATGGCCTGTCTAGTAGAGCTGCTACCTGGGAAAGAGATGGTGATGCCAGGAGAGGACACATCTATAATCCTGGCCCTCAGACAGCCTATGGCTCTCGACAAAGGCCAAAGGTTCACCCTCAGGGACGGCAACCAAACCATCGGCACAGGCCTGGTCACAGAAATCCTCACCATGACAGAGGACGACAAGTACAACTGGGGCTGAGAGACCTTATGAAAGAGGAAACTCTTTGAGAATTTGGTGTCTGAAGCCTTTTTGGACTGAAGTTCTAGAAATTACTCTAGAGTTGAATTAAGGCCCTGTTTATTGCAAAATGAAATGTTTGCTAAGGAGAATGACTATGTCCTTATTGATAATGTCTTCGCAAGCCCTTAAAATATGTGCCCACCAATTTTCTGCATAAAGAAACAAATATCGCTCCGATCAGAAATCGAACATCGTCATGGAATAATTTGTCCGTTTTACGTCAAAATATTTAAAACATGCTCCGCTTTCATTATCCTCTGTCCCATCCGAGCAGTTCACAAGGAGAAAAATAGTACTTTTGTTAAAGCTTCCCAATTTACACTGTACATGGCTCTTTGTTGCATGCCGTTCATCTACAGACACACATTGGATTCTTTTCCTCTCTGGTTTCCAGTCATCTGTCTAAAAAATGTGGCTAATGTAATAAA

Function

GO:

id name namespace
GO:0070125 mitochondrial translational elongation biological_process

KEGG:

id description
K02358 tuf, TUFM; elongation factor Tu

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378183 lncRNA downstream 34994 2156517 ~ 2158361 (-) True G332656
TU378366 lncRNA downstream 46855 2146202 ~ 2146500 (-) True G332821
TU378365 lncRNA downstream 47614 2144904 ~ 2145741 (-) True G332820
TU378165 lncRNA downstream 74209 2118370 ~ 2119146 (-) True G332638
TU378177 lncRNA downstream 75105 2117936 ~ 2118250 (-) True G332650
TU378420 lncRNA upstream 88373 2289648 ~ 2290022 (-) True G332866
TU378429 lncRNA upstream 97194 2298469 ~ 2298893 (-) True G332871
TU378431 lncRNA upstream 102991 2304266 ~ 2330958 (-) True G332872
TU378453 lncRNA upstream 212434 2413709 ~ 2419211 (-) True G332894
TU378460 lncRNA upstream 227583 2428858 ~ 2455150 (-) True G332898
CI01000113_02170894_02179511.mRNA mRNA downstream 11936 2170761 ~ 2181419 (-) True CI01000113_02170894_02179511
CI01000113_02159290_02165087.mRNA mRNA downstream 28268 2158710 ~ 2165087 (-) True CI01000113_02159290_02165087
CI01000113_02136165_02143106.mRNA mRNA downstream 50249 2135324 ~ 2143106 (-) True CI01000113_02136165_02143106
CI01000113_02127709_02131244.mRNA mRNA downstream 62111 2127209 ~ 2131244 (-) True CI01000113_02127709_02131244
CI01000113_02007178_02015572.mRNA mRNA downstream 177520 2007178 ~ 2015835 (-) True CI01000113_02007178_02015572
CI01000113_02334123_02335356.mRNA mRNA upstream 132236 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02348726_02354574.mRNA mRNA upstream 147331 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02356565_02370009.mRNA mRNA upstream 155290 2356565 ~ 2370009 (-) False CI01000113_02356565_02370009
CI01000113_02479865_02481505.mRNA mRNA upstream 277542 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02491883_02493061.mRNA mRNA upstream 289378 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
TU378176 other downstream 44797 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 1746518 390227 ~ 446837 (-) True G332160
TU377671 other downstream 2143870 47990 ~ 49485 (-) False G332210
TU378382 other upstream 49570 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 166341 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051105 True 1784 mRNA 0.49 10 NC_007114.7 13582019 ~ 13599482 (-)
bowfin (Amia calva) AMCG00012246 True 1179 mRNA 0.63 8 CM030138.1 13882244 ~ 13885130 (+)