RNA id: TU377621


Basic Information

Item Value
RNA id TU377621
length 3513
RNA type TUCP
GC content 0.51
exon number 18
gene id G332160
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 390227 ~ 446837 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCAGGTTGTTTTTAGCTGTATTCTGTAACAAGTGAGTAAATTGGGTAGCTAAAACACTACCCTTTCATAATCAACTATTACTCCATCAGAAGTAACACACAAATAAAAGAATATCATTTGAGTGCTCAACGTGTAACGAAAATATGGCAGTAGTAGGTACATTTATCAAGGCACCGAAGGTACAGAGTTTTTTCGTCCCTGGATTCTGAGGTTGACTAAACAAAGACAAACCTACCCCTGACATGCTAAAACATAAAAAGTACAACAATCAAATTGGAGAAGACGAGTTCTCCGTTTGGTGTACCAGTGCTTTTATGATGACACTGCCTTCTGAGACTGTAGTGTAAAGAAAGTTTTCGGGCGAGGGTGACCCTGTTTTCATATGATTATCAGACACCCTTATCAATAGACTACATAAAACTTTAGGGTACGTTAAAAAGCGTTCTTCATTTTCAGAGTCCTAAAATCATGGTCAAAGTTGAGTTCCAACTTGCACTTGAGTAAAAAAAGCAACACAAGCATACTGTCCACGTTCACAGAAAGGGCTTCATTTGGGAGAGATGAAGTGCAATTGGAGGAACACTGGGGGCCGGCGGATGCAGATCAACGACCAATCAAATCCCTCTGTCCCCGAAGCCCCGCCTCTCCCTCAATGGAGGTGCGCGTTGAGGTCGTACTTCTCACAGAACTTGTCAGTGAAAGGAATGCAGGTGAGCAGCTCGCACCACTCACACTTGATGGGATATACGTAGAAGAGCACCACGAGTCCGGCGAACAGGCCCACGAACACCACCAGGAAGATGATGATCTGGCAGCGCTTGCGGTACATGTCCAGGCGACCGAAGCTGATGTAGGGCAGGAAGGCGAAGGAGAGGAAGAAGCCCGAGATGAATCCGCTGATGTGGGCGAAGTTGTCGATCCAGGGCAGCAGGCCGAAGGCAAACAGAAAGAGCACCACGCACAGTAGCTTAGTGAAGGCCCGCCACGGCTGAGCCAGAATCTGCCAGCTCTGAATCAGCTCCACAAACAGACAGGCCAGGATGCCAAACTGAGAGCCAGCTGGACCCACCTCAGCCCTGTAGGGGAGGAAGATGGCACTAGCCAGGTTTCCTGTGATGCCACTCAGGATATAGATGATAGATATTCGAAGCCATCCGGCCAACTTCTCCAGGTCTCGAAGAATTGTCATCTGAAAACATACCGACACCAGGCAATGCAGAATCCCAGCATGCAGGAACAGTGAGAGCCAGAGACGGTAAAACTGATCTGGGACCTCCGGGTTCAGGAAAGGAAGAAGGCCACAAACGTCATCCATGCAGTGCACTTGTGAGCAGAGTGTTGCCTCCTCGTGGAAGTATCCTTTCATGAAGTCACAGTACTCCCTTGATGTGATTTCACACCTCCCTTTAGTGCCGATGCAACAGGGCCGGCCGGTGATAGTACAGTCGATATGAGGCAGATTGGTGTGGTTCCCAGAATTATATTTGGTGCAGATTGGCCATTTAGTGATGTCATCAGGCCACTCATGAGGAGATACCGAGGCTGGCTCTATACACGTCCTGGGGTCCTGATGACACACAGAGCCATACTGCCGGTTCTTCCCCTCCAGCTGAGGGGTGCTGGGATGCTGAGGCCATTTTACCCATACAGCCAAAGTGCTAGAGCATTCCTCCTCTAAGGTCTGCAGACAACCTGAACGGTCGTTGCGCACACAGCAAGCCGAATTTCGCTCCATTTCCCGCTTTTTTTTAATCAGTTGATGTACCTGCTGGTCCCGTCGCATACAAGGTGAAAATTTGGCTCCCAGGTGAATCAAGGCCTCCGAACTTGGTCCAATCCAAAAGTTCTCTTGCTGCACGAATTTGACATTTTCATAAACGCCTTTATTTCTTAGGACAGAATCGACGGTTTCATGCTGGGAGAAGCCCACTGGTGCAATGCCATAAATACACACTGCCAAAATGGTGATGAGTATGTGAACGAACGTTATCCAATATGTAAAGAAAGGCCTGTGGTCATCCATGTCCTCTATCTGTTGTTTCACGTAGCTGTCGATACGCTTGCGATATGTTCGATTGGTCAGCTTTCCCACCATGCCCAATCCATATGGTCTTTTTTCTCTTGCAAAGAGCTTCTTTACAGGCACGGCTATGCGCTGGCCTCTCCGCTGACCGTTCACACTCACTACCTCCTGCCTCAGTCTGACTTTAGGGGGCGCTGCTGTTCCCTCCTTAACTTTTCGCCAGCCGCGCTCTAAAGGTAGCATTAAGTGACTCCTTTCCAACTCGCTTTTGTCCAGTGCGCTGCCTGTTAGCTCCGATTCATCCAGCTGTTTGCTGTCCACGTCCTTCATGGTGGAGTCTGTTGGAGACTCAAACACCTCATCGTGAAACGTGGACATCTCCTCATGCATCAGGGCATCCCTAGCAAAGAACGATGTGTCCAGTTCATCTGGGAAGTCCACGACATCTTCCTCAATAAAGCTAGCAGGTGTGAAGCTGCGCCTGTGAGCTCGTCGTAGCGTGCCCTCGCGCAGCGAGCGACCCTTGACCAGAGCTGCTGCCGCCCTGAAGCTCATCTTGGCCACGGATTCACGCTTGCGTCTGCGTGGGATGCGGTTCAGGCCTGAGCGAGAGCTGTTGAAGGAGCACAGGGATGCAGCGCCGGGGGTGATAGGAGTTTGAGGCACACTGTAGCCATCTACTTCCTCGACCATGCGAAACGCACGTCCTCGTGCCAGTGGGTCCACAATCTTCTGCATGCCATGCTGAGATGAGGGTACGTATAGAGGTGGAGGGGTTTCCGTGCTGGTCAGGGAGATGTTGTCCTGGCTGGGCAGCTCCATCTCACGGATCACCTGAGGTTTCAGCTTGCCGTAGCGCAGGCTGCAGTGTCGCAGGCTCTTCCTCTGCCATTTCTGCGTGGCGTCGCCGTCCTTACTGACCCCGAACCAGTCCGCCGTGCCCCTCTTGATGGTTTGGGTGATTGAAGACTGACGCTGGAAAGCAGCTCGACGGGGGTCAAAGAGGTCCCGTGGAGGGGAGGGGAGATGAGACGTTTCCACTGGCATACTGACGCTGCGATGGAAACCGTGCCTCTTCACTGGCTGTACAAAAGCGGGAGCTTCGTCCACGGACACCTGAGCGGTGGGAATGTCCAGTTTTAGCCATGGAGGCTTCTTGCGCTGCAGGCTGCTGGTGCTGTCGCGTCTGGGTTCAGCCATGCTGCCTGCCTCTCCCTAGACCTGCCAGCCTTATTCGATCCACAAGCACTTCGAAACGGTGGAAAAATCTCCAGATCCCTGTGAAATATCGAGGGTGTATACGTTTATTTCATTTTGTCCAACGTTATAAAGCTGCGCAAAAGATAAACAGCTGCAGATGTCAAAGTCTCTCAGTCTTGAGGCTCTCGGTGATAAAATCCAATGTTAAGACATTGTAGAGCAGTTCATATGATTGTTCCCACGCAGCAGCGACTACATTCCCACGCACGCACGACACACAGCGAGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377784 lncRNA downstream 15535 374486 ~ 374692 (-) True G332313
TU377783 lncRNA downstream 15933 374017 ~ 374294 (-) True G332312
TU377619 lncRNA downstream 55611 277363 ~ 334616 (-) True G332158
TU377611 lncRNA downstream 63223 256824 ~ 327004 (-) False G332152
TU377612 lncRNA downstream 63223 256824 ~ 327004 (-) False G332152
TU377826 lncRNA upstream 1113 447950 ~ 448335 (-) True G332344
TU377829 lncRNA upstream 5311 452148 ~ 452348 (-) True G332346
TU377830 lncRNA upstream 5918 452755 ~ 453096 (-) True G332347
TU377832 lncRNA upstream 34076 480913 ~ 481182 (-) True G332349
TU377631 lncRNA upstream 127003 573840 ~ 580135 (-) True G332170
CI01000113_00355640_00360687.mRNA mRNA downstream 29407 355276 ~ 360820 (-) True CI01000113_00355640_00360687
CI01000113_00332256_00333023.mRNA mRNA downstream 57172 332171 ~ 333055 (-) True CI01000113_00332256_00333023
CI01000113_00324040_00324756.mRNA mRNA downstream 65423 323951 ~ 324804 (-) True CI01000113_00324040_00324756
CI01000113_00308045_00308457.mRNA mRNA downstream 81713 307904 ~ 308514 (-) True CI01000113_00308045_00308457
CI01000113_00301490_00302258.mRNA mRNA downstream 87946 301408 ~ 302281 (-) True CI01000113_00301490_00302258
CI01000113_00449242_00453843.mRNA mRNA upstream 2087 448924 ~ 453843 (-) True CI01000113_00449242_00453843
CI01000113_00461761_00471457.mRNA mRNA upstream 14924 461761 ~ 471457 (-) True CI01000113_00461761_00471457
CI01000113_00473025_00476254.mRNA mRNA upstream 25295 472132 ~ 478063 (-) True CI01000113_00473025_00476254
CI01000113_00489480_00490623.mRNA mRNA upstream 42643 489480 ~ 490736 (-) True CI01000113_00489480_00490623
CI01000113_00496299_00500634.mRNA mRNA upstream 49258 496095 ~ 501017 (-) True CI01000113_00496299_00500634
TU377671 other downstream 340742 47990 ~ 49485 (-) False G332210
TU378176 other upstream 1700377 2147214 ~ 2148558 (-) True G332649
TU378382 other upstream 1804008 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 1920779 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052145 False 3541 mRNA 0.51 18 NC_007114.7 54896331 ~ 54992934 (-)