RNA id: TU378176


Basic Information

Item Value
RNA id TU378176
length 1345
RNA type TUCP
GC content 0.45
exon number 1
gene id G332649
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2147214 ~ 2148558 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCCAATAAAAATGTTATATTTTGTCAGTTTACTGATAGCAGTCTATACATTAATCAGATTACAGATAAAAGGCACTGTTATAAATCAGGCATTTCTAAATATTCCCATTATTTCACCATTTTTTCCCCAAAATGCATTAATATTAATAAACTGTCAGTCAGTTTATAATCTATTATAATCTAATAATATGATAACAAAAATAAGTATATGCACACTTAAAACTGTCTGTATAATAACTGTACTTCTCATCCAAGCCGGTTACATTTACATGAACAGATTTCACAATTACAATTACATACAACCTTTGTGGTTTCCCTAGGCAGGTGAAACAAAGAACACCAGACGCACCGAGTAAACCGTATCCACAATGTAGACGATCAGATTGATGCAAGTCATGCAGGACACAACAACCAGGCTGTCCCAGGGGCAACCTTTGCAGTTTTCTGGTCTTGGATTGTTCTTAAAACTGTAGATTGGCCATATCACCACAGCCGTGATGTACATTAGAATCGCCAGTATGTTGTACCCCGTCATACATTTGTCCAACGGGAAGGGGCATCGAGCCAGCAAGCGTCCGATTGTCAGGATGATGATGAGGAGAGCGACGATGAAGCAGATTGAGTAGACGGCCACGCACCACTGCAGCCCAGGCTTATGGCTGTAGGAGACCGAATCCAGACAGATGAAGATGATGCAGGCCACGAACGCCTCCAGAACCTTCAGTAAGCCTGGCACGGTGGACAGGAACCCGCTGATCTCCCCGGGTTTGGCTCGGGTCAGACCCACCTCCGCTGCGTACAGGCAGAAGCACACGCAGGAGATCACTGTGGCTGCAATCCCGATTGAACATGAGGAGCATATGAAGAACGTGGGGTAGATGACCGATGCGGCCAACAGCATAAGCGTGGACAGCATCGCAAAAGCCGTAGTGAAGTCATCCCAAGAAATGGGCACCTTGGTGTTTAGGCTCGTGAGCTCCAGGATGATGATGAGGAGGGTCATGAAACAGCAGAAGCACCAGGTGAACATGCACCAGGTCCAAAATGAATCTGCGCTGACATGGCCCACAGAAGCCACCAGGCTGAAGGTAATGAGTGTCAGCACAAATTCAAATAGCCGGATTATTCCGACCGGCACAGTCAGAGATTGAGTGTTCAGGGTCACCATAATGATCCTCAAATGTCTGTTATATTGTTACACCTTGATTTAGATGCGTCAGCCTTCAAAATGTTGTTGACAGCTCTCTCATTTCCAGCAAGAATATCATTTATCCTCCTCACCTGCTTAATTATTGACTTTTCCGCTCTTTTCTCAGCCTAACCGTCGTCCGTGCCAACTCCAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378366 lncRNA downstream 714 2146202 ~ 2146500 (-) True G332821
TU378365 lncRNA downstream 1473 2144904 ~ 2145741 (-) True G332820
TU378165 lncRNA downstream 28068 2118370 ~ 2119146 (-) True G332638
TU378177 lncRNA downstream 28964 2117936 ~ 2118250 (-) True G332650
TU378188 lncRNA downstream 29426 2116966 ~ 2117788 (-) True G332661
TU378183 lncRNA upstream 7959 2156517 ~ 2158361 (-) True G332656
TU378420 lncRNA upstream 141090 2289648 ~ 2290022 (-) True G332866
TU378429 lncRNA upstream 149911 2298469 ~ 2298893 (-) True G332871
TU378431 lncRNA upstream 155708 2304266 ~ 2330958 (-) True G332872
TU378453 lncRNA upstream 265151 2413709 ~ 2419211 (-) True G332894
CI01000113_02136165_02143106.mRNA mRNA downstream 4108 2135324 ~ 2143106 (-) True CI01000113_02136165_02143106
CI01000113_02127709_02131244.mRNA mRNA downstream 15970 2127209 ~ 2131244 (-) True CI01000113_02127709_02131244
CI01000113_02007178_02015572.mRNA mRNA downstream 131379 2007178 ~ 2015835 (-) True CI01000113_02007178_02015572
CI01000113_01917876_01982420.mRNA mRNA downstream 164794 1917286 ~ 1982420 (-) False CI01000113_01917876_01982420
CI01000113_01908893_01913809.mRNA mRNA downstream 232986 1908739 ~ 1914228 (-) True CI01000113_01908893_01913809
CI01000113_02159290_02165087.mRNA mRNA upstream 10152 2158710 ~ 2165087 (-) True CI01000113_02159290_02165087
CI01000113_02170894_02179511.mRNA mRNA upstream 22203 2170761 ~ 2181419 (-) True CI01000113_02170894_02179511
CI01000113_02193825_02200601.mRNA mRNA upstream 44797 2193355 ~ 2201275 (-) True CI01000113_02193825_02200601
CI01000113_02334123_02335356.mRNA mRNA upstream 184953 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02348726_02354574.mRNA mRNA upstream 200048 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
TU377621 other downstream 1700377 390227 ~ 446837 (-) True G332160
TU377671 other downstream 2097729 47990 ~ 49485 (-) False G332210
TU378382 other upstream 102287 2250845 ~ 2251213 (-) True G332837
TU378401 other upstream 219058 2367616 ~ 2368331 (-) True CI01000113_02356565_02370009

Expression Profile