RNA id: TU378401


Basic Information

Item Value
RNA id TU378401
length 485
RNA type TUCP
GC content 0.42
exon number 2
gene id CI01000113_02356565_02370009
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 2356565 ~ 2370009 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTATATATTGACTTGAGTGAAGATGGCACTGAGGTGGCCATTAAACGAATAATAAAGAACCCGAAGAACAACAAAGACTTTGACAATGAACTGAAGTGTCTACAAGATTTAAAGCTTGAGAGCAAGTATATCGTCAGGTATGTGACCTTTGTAGTGGATGAAGATTTTTACTATCTTGCAAACCAGCTTTGTGAATACGATCTGGAAGACTACATGAAAGAGCTTCGTCAGCAAGAACGAAATGACAAAGAGAACATTTTGAGGAAAATAGTGAAGGAGATGCTTCTTGGCCTTCAAGTTCTTCACCGTGCTGGAGTGATACACCGTGATATAAAGCCTAGAAATGTTTTGATAGATACAGAAGGAAAGGCAAGGCTGGCCGACTTTGGTATAAGTCGCAAACTGGAGGAGGGAAAAACCACAGTGTATACTGACAGAGCTGGAACACAAGGCTGGGAGGCAACGGAGATCCTGAATCAGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378431 lncRNA downstream 36658 2304266 ~ 2330958 (-) True G332872
TU378429 lncRNA downstream 68723 2298469 ~ 2298893 (-) True G332871
TU378420 lncRNA downstream 77594 2289648 ~ 2290022 (-) True G332866
TU378183 lncRNA downstream 209255 2156517 ~ 2158361 (-) True G332656
TU378366 lncRNA downstream 221116 2146202 ~ 2146500 (-) True G332821
TU378453 lncRNA upstream 45378 2413709 ~ 2419211 (-) True G332894
TU378460 lncRNA upstream 60527 2428858 ~ 2455150 (-) True G332898
TU378480 lncRNA upstream 90870 2459201 ~ 2459527 (-) False G332917
TU378482 lncRNA upstream 90870 2459201 ~ 2459588 (-) True G332917
TU378484 lncRNA upstream 94988 2463319 ~ 2463563 (-) True G332919
CI01000113_02348726_02354574.mRNA mRNA downstream 13042 2348606 ~ 2354574 (-) True CI01000113_02348726_02354574
CI01000113_02334123_02335356.mRNA mRNA downstream 32260 2333511 ~ 2335356 (-) True CI01000113_02334123_02335356
CI01000113_02193825_02200601.mRNA mRNA downstream 166341 2193355 ~ 2201275 (-) True CI01000113_02193825_02200601
CI01000113_02170894_02179511.mRNA mRNA downstream 186197 2170761 ~ 2181419 (-) True CI01000113_02170894_02179511
CI01000113_02159290_02165087.mRNA mRNA downstream 202529 2158710 ~ 2165087 (-) True CI01000113_02159290_02165087
CI01000113_02479865_02481505.mRNA mRNA upstream 110486 2478817 ~ 2483526 (-) True CI01000113_02479865_02481505
CI01000113_02491883_02493061.mRNA mRNA upstream 122322 2490653 ~ 2493575 (-) True CI01000113_02491883_02493061
CI01000113_02542996_02548587.mRNA mRNA upstream 174665 2542996 ~ 2548587 (-) True CI01000113_02542996_02548587
CI01000113_02585185_02588728.mRNA mRNA upstream 216361 2584692 ~ 2588797 (-) True CI01000113_02585185_02588728
CI01000113_02604593_02611740.mRNA mRNA upstream 236202 2604533 ~ 2611990 (-) True CI01000113_02604593_02611740
TU378382 other downstream 116403 2250845 ~ 2251213 (-) True G332837
TU378176 other downstream 219058 2147214 ~ 2148558 (-) True G332649
TU377621 other downstream 1920779 390227 ~ 446837 (-) True G332160
TU377671 other downstream 2318131 47990 ~ 49485 (-) False G332210

Expression Profile