G332170


Basic Information

Item Value
gene id G332170
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 573840 ~ 580135 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU377631
ACCACACCGGTGTCTCTTCACACCACCTCCATCCTTATTGTTCTGGTCAATTTGATCAGAGAAAAACGTGTCAAAGATCTGGTAGACCAGTTTAGTGGTGGTGGCTTTAGTCGGCCCCTTGCTGTCCTTCTCAATCTTGGTGGGATGACGAATGGCTTGTCTTCTGGCTGCTCTCCTCTTTCCCAAAGTAACACCAGCCAGCTTGATCAAGTCTCGCATACAGGGCGTGACGATGATGGGCTGCTCATCTGAGTCTCCAGCCTCATCATAGCTCTCCACCTGCTCCACCACAAACTGGGCATGGCGCAGCAGCGTGTCTTCAGTGAAGCGGTTGAAGTTGAGCCCAGCAGGCGGAACAGTAGTCTCAATTTTGTTAAGCAGATCTTCATATGTGGCGTCCTGGTTTTTCTGGAGAAACTCAACCACAATCTTGCTCATGTAGATCTTCTCCTGCATCAGAGCAAAAATGAGAGAGTACTCCTCACTGGGGTCCATTAGGATGTAGTCAGCAAAAGCTGTTGTGAAGCCAATTAAAGCTTTCTCCCCACCATCAAAACCAGTGATCCACCAAGCATTGATGGGACCAAGCTTCTTGGCAGGAACCCCACCATCCATGCATGGGTTGTCATCGTAGATGGGCTTAACGGCACAGCTGAAGTACAGTTCCACATTTTTCTCAATGAGGCCAGAGTCAAACGGACACAGGTGCCCATGCTTGTCATACACGCTGAAGTTAGTGATCTTGTGCTGAGGCAGTTCGTCATAGCTTTCAAAACCATCCTCATTTGCATCAAAGAGGGAAAGACGCTCATCGGTCAACATCTCTGGTTCATCCAAAGCATCATCAGGATCTCCCTGGAAGAACTTGAGGTCTGAATCATCCAGATACTGTCTGCAGTCGGCACATTTCGGTGGAGGGGTCTTGGCTGTGGACACAGGCTTGATTTTGCCATTAGTGGCATTCTCAGTGTCAGGCTTCTCAGCTTCTGTTTTAAGGCGTTTCTCTTCACGGACCTCCTCTGTAATATCTTCCTCAGTCTTAACTTCTGCGTCACCATTTGTGGCTTCACCATTTAACTCATCAGACTTGCGTTTTGGGACTCTAGAGAACATTGACAGGATGGTTGGCTGTTTCCCAGAGTTCCGTGTAACCCTGGTACTGGCTGGAGATTTCTTGGGCTCAGAGTCTGCTTTACTGCGACGGCCACCCCTTCCCTTCGGGGCGCTGGGAGACTTTATAGCATCTCCTTCCTCCTGAGTATCCATGGCTCCGTCCTGCTCACCATTGTCTTTGTGAGATCCGTTTTCAGCGAAGCCGTTTGAATGTCCGTTCTGCTCCACTCCATCATCCACCTTGACAACTCCCAAAGCTTTCTTCAGTATGGCCTTCACCTCCGATGTGTAAACCTCAGTGGAAAGCTCTGAGCTCTTTAACTTTTCCTCAAGGATTTTGAGCTGGTCCTGAGTATCGGTGAGCAGGAACTCCTGCAGTAACCTGAGCTTTTCCTTTACACAATCCTCATCTGACAAACTGTCTCCACCTTCATCCAGCACCTGAAGCCGTTCTTTGACATCCTCTGGCAGAGACAATGAGGTCCTGGTAGGCATTTCAAGTTCGAGTTTGAGCAAAGAAAATTACTATTTAAAAAACACGATTTAAAACAACAACAGATAAAAGCGGTTATTAAAATCTGACAGTGCCAACAGCAGCGCGCGCTAGAGGGGCTCAACGGGCTTTATGATTTGTCGCTAGCAGCTGGGAAATACGCGCGGGCCGCTTTTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU377631 True 1784 lncRNA 0.49 15 573840 580135

Neighbor

gene id symbol gene type direction distance location
CI01000113_00529415_00542504 NA coding downstream 30820 529230 ~ 543020 (-)
CI01000113_00511782_00515713 NA coding downstream 58127 511423 ~ 515713 (-)
CI01000113_00503311_00504977 NA coding downstream 67797 502669 ~ 506043 (-)
CI01000113_00496299_00500634 NA coding downstream 72823 496095 ~ 501017 (-)
CI01000113_00489480_00490623 NA coding downstream 83104 489480 ~ 490736 (-)
CI01000113_00593453_00601556 EIF3G coding upstream 13247 593382 ~ 601556 (-)
CI01000113_00611039_00611881 P2RY11 coding upstream 30725 610860 ~ 611939 (-)
CI01000113_00616541_00627359 NA coding upstream 36226 616361 ~ 627359 (-)
CI01000113_00770409_00789987 OLFM2, OLFM2A coding upstream 189998 770133 ~ 790683 (-)
CI01000113_00907179_00957938 COL5A3B, COL5A3, COL5A3A coding upstream 326806 906941 ~ 958094 (-)
G332349 NA non-coding downstream 92658 480913 ~ 481182 (-)
G332347 NA non-coding downstream 120744 452755 ~ 453096 (-)
G332346 NA non-coding downstream 121492 452148 ~ 452348 (-)
G332344 NA non-coding downstream 125505 447950 ~ 448335 (-)
G332313 NA non-coding downstream 199148 374486 ~ 374692 (-)
G332356 NA non-coding upstream 9878 590013 ~ 590327 (-)
G332165 NA non-coding upstream 65455 645590 ~ 648926 (-)
G332384 NA non-coding upstream 109615 689750 ~ 689988 (-)
G332389 NA non-coding upstream 125844 705979 ~ 706261 (-)
G332393 NA non-coding upstream 141522 721657 ~ 721856 (-)
G332160 NA other downstream 127003 390227 ~ 446837 (-)
G332210 NA other downstream 524355 47990 ~ 49485 (-)
G332649 NA other upstream 1567079 2147214 ~ 2148558 (-)
G332837 NA other upstream 1670710 2250845 ~ 2251213 (-)
CI01000113_02356565_02370009 NA other upstream 1787481 2356565 ~ 2370009 (-)

Expression


Co-expression Network