G331619


Basic Information

Item Value
gene id G331619
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1229103 ~ 1235130 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376965
CTGTTTCTCTGTCCTCTGTGCTGCAGTTGATACAGTGTTGTGGTCTTTATGTTCAGACTCCTTACACCACACACAGATGCATTGTTGATCAGTGATACAGAACATTTCTAGCTCTTTATCATGTTTACGGCAGATCATGTCCTGCAGTCGTCCGGTGGCATCGATCACTTTGTGTGGTTTACGAGAGTGAAATTCCTCATGACGGTCAAAATGAGTTTGACAGAAAGACTCCTGACACACCAGACAGGACTTGACAGCTTTGTATTTTCTTCCAGTACAGACGTCACACTGCACGTCTCCAGCTCCAGCGTAACAGTCAGCAGGAAGTTTAGTCTTCTTCAGTTTCTCCACCACTTCAGCCAGCATGGTGTTTTTAGCTAAAGCAGGTCTTGGACTGAAGGTCTGTCTGCACTGAGGACAGCTGTAGACTCTCTTCTCATCCTCCTGATCCCAGCAGCCTGTAATACAGCTCTCACAGTAACTGTGTCCGCAGTGGATGGTCACTGGATCCTTCAGGAGATCCAGACACACTGGACATGTGAACGCATTCTGATCCACTGAAATCCTGTCTTCTGCCATTTTACTGCATGAATACAGAGGGACACAAACACACAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU376965 True 617 lncRNA 0.47 2 1229103 1235130

Neighbor

gene id symbol gene type direction distance location
CI01000113_01127641_01134250 NA coding upstream 94622 1127641 ~ 1134481 (+)
CI01000113_01120464_01124821 NA coding upstream 104072 1120398 ~ 1125031 (+)
CI01000113_01110162_01112498 NA coding upstream 116601 1110162 ~ 1112502 (+)
CI01000113_01072283_01091398 NOTCH3 coding upstream 137373 1071905 ~ 1091730 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding upstream 223704 996863 ~ 1005399 (+)
CI01000113_01292096_01298082 NA coding downstream 56823 1291953 ~ 1299919 (+)
CI01000113_01321501_01326215 NA coding downstream 86226 1321356 ~ 1326350 (+)
CI01000113_01329811_01334714 LPAR2A coding downstream 93753 1328883 ~ 1334735 (+)
CI01000113_01376249_01385209 NA coding downstream 138937 1374067 ~ 1385402 (+)
CI01000113_01424978_01425704 NA coding downstream 189848 1424968 ~ 1425835 (+)
G331652 NA non-coding upstream 22841 1205979 ~ 1206262 (+)
G331651 NA non-coding upstream 23226 1205587 ~ 1205877 (+)
G331647 NA non-coding upstream 26800 1202089 ~ 1202303 (+)
G331646 NA non-coding upstream 29474 1199396 ~ 1199629 (+)
G331645 NA non-coding upstream 30505 1198396 ~ 1198598 (+)
G331590 NA non-coding downstream 14550 1249680 ~ 1251812 (+)
G331583 NA non-coding downstream 22058 1257188 ~ 1257858 (+)
G331661 NA non-coding downstream 41208 1276338 ~ 1278800 (+)
G331692 NA non-coding downstream 130688 1365818 ~ 1367922 (+)
G331702 NA non-coding downstream 154182 1389312 ~ 1389551 (+)
G331487 NA other upstream 306970 917735 ~ 922133 (+)
G331470 NA other upstream 312566 913392 ~ 916537 (+)
G331260 NA other upstream 894482 334158 ~ 334621 (+)
G331615 NA other downstream 11161 1246291 ~ 1246573 (+)
G331767 NA other downstream 427655 1662785 ~ 1663255 (+)
G331759 NA other downstream 432872 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1108291 2342987 ~ 2346006 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026744 BX769173.1 coding NC_007114.7 CM002887.2 48986671 ~ 48993580 (-)