CI01000113_01292096_01298082


Basic Information

Item Value
gene id CI01000113_01292096_01298082
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1291953 ~ 1299919 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000113_01292096_01298082.mRNA
GAATAAAAATTGACCTTTGAACTGGTCACAGATCATTACATACCACTATGGAATGTGTGTAAGGGGAGGAAGTAGCTCTGGTTACTGAGAACCTGAGCACACACACCAGGAAATCTGGTTCTACAGGCAGGCCAAGCCCAACCATGACGCATGAAAGGGAGGGTGTAAAAACCGACGGCAAACAAAATGGCTGCGTCCCTACCGAAAGTAAACAATTAATCATTTATGCTGATACTGGGAGTTTCTCAGGACAGAAAGCTCCAGGCTCCCAGAGGAGGTCTAGCGCTTTGATCAGTGACCTAAAACGACTTCGTACAGGGTCTAACAAATGTCTATTGGAGAATGGAGCCAGGAGCGCACTGGCAGCGCAGCACACGACCGATCTTCTGCTTGCCTCCCCCCACTACACCGAGGGCTGCCTTATCTGCTGCCTCTCCACACGCCGCACACATTCACACATGTCTAGACTGCACCGGCACAAAAAAACAAGCCACATTGGGGCTGCCCAACCGGCGCGCAGGAACTGCCCTCCGTGCCAAACTACACGGATGCACGAGACGCTGAAGCTCAGATGGGAGGGTTTACAAGGAGTAGACGGAAACGGTGAGACACTTGATGACAGACAGACCAGAGGGATGAAATTGTGGATTCTTATTGTAACTGAAGATGACGTCCCTAGCACATTGCCTAACATCACAAACTTTGCTACTGAGTTGGAAGGGGTTTTCAAAGATGCTTCAGACCTGTAGTCTGCAGTTTCTTACCTGTTCGGCCTTCTCTTTGCCTTGAACTTTGAGTGCTTTGAGTTTTGTTTGTTTTTTTTCTCTCTTTTCTCTTTTGGTATTGTTTTAACTGATTGTTGTATTTATTTTATAGTTAAGGAGTATGGTTGTGGTGTTTGACATTGTTCATATTTTCATTTCAATATGTAAACAAGAGCTTTTGCTGCTGGTTTCTATTAAGTTAAACAAAACTTCAAGCCTGCAGTTATAGCTTCATTTCATAACTTTGTTTTAATGTTAACCTCTTAAACTTCATCTGGATGCCAACGCACTGAAGCACTCTTTGTTTATATTAGTTTTAGTGTAAATGACTGTAATTGCCTCAAACTATACATTAAAAAGATCCAAGACTCAAGCTTCAGTATTTAACCTCTGTTTTATTCTGAAAAATCTGCAGTGACAGGTATGTCTTAATTTGTGTAAGGGATTATAAAAATGAAAAAAGAGTCGACACCTTTAATATGAATGAGCGTCAGCAGCATCAATTCAGAAAAAGAAAGAAAAAAAAACGGTCGTCATGAAAATGCTTGACAAAATCTCTCTTAGGGCTTTTATCTCAAAAGTGTGCACATTTGGAGAAATACCGATAGATTCTCATATGTATGTCAAATTTCTATGGAGAGGAGTAATATTTATTACATTATTACCCAAAATACCTTGATTTGGAGACTATAAACAATTACAATGATATATGGTTTATCTGTGTTCTTCAAGCTATTTCAGGTATTTTCATAATAAATTATATTTATAATGCAATGTTAATCAACATTGCCTTCATCAATGTGCAGAATACTATAAAAGAATATATTTTATCTTTTTTTTTTTTTATCCGAAGCCACATCATGTCACAGAAGGTTCTTTAAAACACTCAACTTGCATTATAAAGTGAGTCTGGAGCAAAAACATGGTTTTAATCTCATAAATTGTGTTTTGATGGTGTGCTAAGCTAACATGCTAGCTAGCCCCTGTGCACCTGTTCCTATATAGGAGCGAATATCTAATGCTTTATAAATAATTTTGAATAGTAAAGCTCACTGAAATGTTTCTTTTTTCAAGAAGGGCATTTGATACAATTTCAAAGATGAAGTGAAAAGTTTGATCAAAGAAATGAGGGATTAAAACAGTGTGAAAAGAAAGTCGTCAGTAATTATAATAGAGACAAAAGAAGAATAATTAGAGCCATAACCAGGCCAGAGAGGTGTGAATGTGTGCAGGGAAGACTGAAACTGAATGTGGCAGTTTGCGACAAAACAATAGAGACAGTACACTTGCTTAGAATATGGCAATAAACATTAGTTAGCATTAGAGTCTTCTCAAAATAAAAATCACATGACATGATTTTGAAAAACAGTTTTAGATTTTAGATCGGCCCCACTTTATATTAGATGGCCTTAAAGGTGCAATATGTAAGAACTTTGCAGTAAAATATCCAAAAACCATTAGGCCAGTGTTATACATTTTGTTCACTTGAGTACTTACAATATCCCAAATGTTGTGCATTTCTAGATTAAAACATGACCAACTTCAACTTTTCATAAAGATTCCATAAAAATAAATTTCTAATAACTTTACAAAACTTTGAAGCTATTTATAACTTCTTTTTTTTTCTTCATTTTGACAATAATTAACTCTGACTTTACAATAAACTGCCAAGTGTCTGCTTTCAAATGAGAACATACTTACGCTTTTAGTGCAAAGGCTTCATGAACTGTATCTGTTTTAGCTCAGGTATGCCATTTCTTGGGATTTTTCCAAAAGCGGGGGTGAAGGCTAACAGGTTAACTAGAACAAAACACCTTTTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000113_01292096_01298082.mRNA True 2586 mRNA 0.37 4 1291953 1299919

Neighbor

gene id symbol gene type direction distance location
CI01000113_01127641_01134250 NA coding upstream 157472 1127641 ~ 1134481 (+)
CI01000113_01120464_01124821 NA coding upstream 166922 1120398 ~ 1125031 (+)
CI01000113_01110162_01112498 NA coding upstream 179451 1110162 ~ 1112502 (+)
CI01000113_01072283_01091398 NOTCH3 coding upstream 200223 1071905 ~ 1091730 (+)
CI01000113_00997825_01005290 RDH8A, RDH8 coding upstream 286554 996863 ~ 1005399 (+)
CI01000113_01321501_01326215 NA coding downstream 21437 1321356 ~ 1326350 (+)
CI01000113_01329811_01334714 LPAR2A coding downstream 28964 1328883 ~ 1334735 (+)
CI01000113_01376249_01385209 NA coding downstream 74148 1374067 ~ 1385402 (+)
CI01000113_01424978_01425704 NA coding downstream 125059 1424968 ~ 1425835 (+)
CI01000113_01507537_01509522 NA coding downstream 207618 1507537 ~ 1509522 (+)
G331661 NA non-coding upstream 13153 1276338 ~ 1278800 (+)
G331583 NA non-coding upstream 34095 1257188 ~ 1257858 (+)
G331590 NA non-coding upstream 40141 1249680 ~ 1251812 (+)
G331619 NA non-coding upstream 56823 1229103 ~ 1235130 (+)
G331652 NA non-coding upstream 85691 1205979 ~ 1206262 (+)
G331692 NA non-coding downstream 65899 1365818 ~ 1367922 (+)
G331702 NA non-coding downstream 89393 1389312 ~ 1389551 (+)
G331611 NA non-coding downstream 93326 1393245 ~ 1399662 (+)
G331709 NA non-coding downstream 188642 1488561 ~ 1491072 (+)
G331732 NA non-coding downstream 243928 1543847 ~ 1544077 (+)
G331615 NA other upstream 45380 1246291 ~ 1246573 (+)
G331487 NA other upstream 369820 917735 ~ 922133 (+)
G331470 NA other upstream 375416 913392 ~ 916537 (+)
G331260 NA other upstream 957332 334158 ~ 334621 (+)
G331767 NA other downstream 362866 1662785 ~ 1663255 (+)
G331759 NA other downstream 368083 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 1043502 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 1268848 2548934 ~ 2577790 (+)

Expression


Co-expression Network