G331611


Basic Information

Item Value
gene id G331611
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1393245 ~ 1399662 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU376955
TAAATGTCAAGGCATTTAATTATTTGTAGAAATCTTGTACAAAACAATATACAACAGTCTTTAAAACACACAGGTAAAAGTAGAGCTTTGAATAACTAGTCTGCCATCTAGTGTCCATCTTTGCACTTCATGTACGCATTCTCTCACACACCAGAGGACATTAAACAAAACAGCTACAGACATTAAAGACAATTCGATATTCATTAGCAAATCATGGTACTGTCCACACAGAGTAGCAATTACTGGTTAACAGAAAAATGACGTATTTTGTTATAGGAAAAAAGTAGAATGTTACATTAAAAAGTTATTAATGCATAACCAAAATGGTCATATCAGATCACAGAGCTTTTCTGTGGAAGCCTAGCATCTTATGGGAGGAAAACTAGGAGGAAACACTAGATATGGGTCCTTTTATCAGCTGTCTGACTGGGGATGAAGGGAGATTCTGAAATCCAGCCCTGGAAGCTAGTCTGGTGCTGGTCTCTTTTAGCAGCAGCTGAGATTTCTCATGGAAAGACAGCAGCTCCCTCATTATACAACAGTGAGAGTCCATCACTAGCTCCATGTTTCTGAGTAGTTTTTGCTGTCCCATGAGTACTGCCTTGTAGTCAGGTTTGTTCAGAACGAGCCGACTCTGTGAAGACTTGGCAAAGCATGATGGGTCCAGTGGCACGCCCTTTTCTTCACCCCGCTCCACACATTTGTCCAGTTCGTCAGCTTTGGTCCGGTGTTTCTTCAGTAGCGACTCCCATGACATACTTTCAGCCTGTAACCTGTTAATGTCCTCCTGAATGCGCGCAGTGGCCGTGTTAACAACGGGGTCACTCTCAGCAGTTGGGAGTGAATTCTGAGTTTCTCTGCTAATGTCTTGAGCCATACTGTCCCATTCTTCATGCAAAGATTCAACTTGAGTCTGAAGCGTCTCTGTATCAACACCAGGAACGGTGTACAGACTGTTTTTGACCCTCTTCACTGTCCTCTGCATAGCAGCTTTAATTAGCATCTCCAGCCTCTCATTGTCAGGTAAAGACAGACTGATGGTTTCACACAGGGGCTGTGAGGAGCCGGGGAGGGCCGGCAGAGAGCGTCTGCCTCTGGATGATCTCCTCCAGGATTTCCTCCGTGAGCGAGGATTCAGTTCAGGAGCAGTAATGTTCACACTTTCCCTCATGCCTTCCTCAACAGAGCTCATCTTCGAATCCTCTGGCCGTTCCTCTTCTCCTGAACGCTGCATTACTGCATGAGCAGGTGATGTGCAAGGAGACTTCTGAGGAGGACCTGAGACGTGGTTACTATCATGAGGCCGTTTGACTCCATGAGACACTTCTGAGAGCTAGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376955 True 1341 lncRNA 0.45 9 1393245 1399662

Neighbor

gene id symbol gene type direction distance location
CI01000113_01376249_01385209 NA coding upstream 7843 1374067 ~ 1385402 (+)
CI01000113_01329811_01334714 LPAR2A coding upstream 58510 1328883 ~ 1334735 (+)
CI01000113_01321501_01326215 NA coding upstream 66895 1321356 ~ 1326350 (+)
CI01000113_01292096_01298082 NA coding upstream 93326 1291953 ~ 1299919 (+)
CI01000113_01127641_01134250 NA coding upstream 258764 1127641 ~ 1134481 (+)
CI01000113_01424978_01425704 NA coding downstream 25316 1424968 ~ 1425835 (+)
CI01000113_01507537_01509522 NA coding downstream 107875 1507537 ~ 1509522 (+)
CI01000113_01510550_01513751 NA coding downstream 110888 1510550 ~ 1514206 (+)
CI01000113_01515238_01529826 NA coding downstream 115509 1515171 ~ 1529951 (+)
CI01000113_01530888_01533572 NA coding downstream 131129 1530791 ~ 1533572 (+)
G331702 NA non-coding upstream 3694 1389312 ~ 1389551 (+)
G331692 NA non-coding upstream 25323 1365818 ~ 1367922 (+)
G331661 NA non-coding upstream 114445 1276338 ~ 1278800 (+)
G331583 NA non-coding upstream 135387 1257188 ~ 1257858 (+)
G331590 NA non-coding upstream 141433 1249680 ~ 1251812 (+)
G331709 NA non-coding downstream 88899 1488561 ~ 1491072 (+)
G331732 NA non-coding downstream 144185 1543847 ~ 1544077 (+)
G331735 NA non-coding downstream 155549 1555211 ~ 1555470 (+)
G331737 NA non-coding downstream 168167 1567829 ~ 1568207 (+)
G331744 NA non-coding downstream 186036 1585698 ~ 1586364 (+)
G331615 NA other upstream 146672 1246291 ~ 1246573 (+)
G331487 NA other upstream 471112 917735 ~ 922133 (+)
G331470 NA other upstream 476708 913392 ~ 916537 (+)
G331260 NA other upstream 1058624 334158 ~ 334621 (+)
G331767 NA other downstream 263123 1662785 ~ 1663255 (+)
G331759 NA other downstream 268340 1668002 ~ 1828903 (+)
CI01000113_02342987_02345449 SYCE2 other downstream 943759 2342987 ~ 2346006 (+)
CI01000113_02548934_02576888 TBL3 other downstream 1169105 2548934 ~ 2577790 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025753 dsn1 coding NC_007114.7 CM002887.2 52953489 ~ 52980049 (+)