RNA id: TU376955


Basic Information

Item Value
RNA id TU376955
length 1341
lncRNA type antisense_over
GC content 0.45
exon number 9
gene id G331611
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1393245 ~ 1399662 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATGTCAAGGCATTTAATTATTTGTAGAAATCTTGTACAAAACAATATACAACAGTCTTTAAAACACACAGGTAAAAGTAGAGCTTTGAATAACTAGTCTGCCATCTAGTGTCCATCTTTGCACTTCATGTACGCATTCTCTCACACACCAGAGGACATTAAACAAAACAGCTACAGACATTAAAGACAATTCGATATTCATTAGCAAATCATGGTACTGTCCACACAGAGTAGCAATTACTGGTTAACAGAAAAATGACGTATTTTGTTATAGGAAAAAAGTAGAATGTTACATTAAAAAGTTATTAATGCATAACCAAAATGGTCATATCAGATCACAGAGCTTTTCTGTGGAAGCCTAGCATCTTATGGGAGGAAAACTAGGAGGAAACACTAGATATGGGTCCTTTTATCAGCTGTCTGACTGGGGATGAAGGGAGATTCTGAAATCCAGCCCTGGAAGCTAGTCTGGTGCTGGTCTCTTTTAGCAGCAGCTGAGATTTCTCATGGAAAGACAGCAGCTCCCTCATTATACAACAGTGAGAGTCCATCACTAGCTCCATGTTTCTGAGTAGTTTTTGCTGTCCCATGAGTACTGCCTTGTAGTCAGGTTTGTTCAGAACGAGCCGACTCTGTGAAGACTTGGCAAAGCATGATGGGTCCAGTGGCACGCCCTTTTCTTCACCCCGCTCCACACATTTGTCCAGTTCGTCAGCTTTGGTCCGGTGTTTCTTCAGTAGCGACTCCCATGACATACTTTCAGCCTGTAACCTGTTAATGTCCTCCTGAATGCGCGCAGTGGCCGTGTTAACAACGGGGTCACTCTCAGCAGTTGGGAGTGAATTCTGAGTTTCTCTGCTAATGTCTTGAGCCATACTGTCCCATTCTTCATGCAAAGATTCAACTTGAGTCTGAAGCGTCTCTGTATCAACACCAGGAACGGTGTACAGACTGTTTTTGACCCTCTTCACTGTCCTCTGCATAGCAGCTTTAATTAGCATCTCCAGCCTCTCATTGTCAGGTAAAGACAGACTGATGGTTTCACACAGGGGCTGTGAGGAGCCGGGGAGGGCCGGCAGAGAGCGTCTGCCTCTGGATGATCTCCTCCAGGATTTCCTCCGTGAGCGAGGATTCAGTTCAGGAGCAGTAATGTTCACACTTTCCCTCATGCCTTCCTCAACAGAGCTCATCTTCGAATCCTCTGGCCGTTCCTCTTCTCCTGAACGCTGCATTACTGCATGAGCAGGTGATGTGCAAGGAGACTTCTGAGGAGGACCTGAGACGTGGTTACTATCATGAGGCCGTTTGACTCCATGAGACACTTCTGAGAGCTAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377049 lncRNA upstream 3694 1389312 ~ 1389551 (+) True G331702
TU377039 lncRNA upstream 25323 1365818 ~ 1367922 (+) True G331692
TU377007 lncRNA upstream 114445 1276338 ~ 1278800 (+) True G331661
TU376915 lncRNA upstream 135387 1257188 ~ 1257858 (+) True G331583
TU376924 lncRNA upstream 141433 1249680 ~ 1251812 (+) True G331590
TU377056 lncRNA downstream 88899 1488561 ~ 1491072 (+) True G331709
TU377079 lncRNA downstream 144185 1543847 ~ 1544077 (+) True G331732
TU377082 lncRNA downstream 155549 1555211 ~ 1555470 (+) True G331735
TU377084 lncRNA downstream 168167 1567829 ~ 1568207 (+) True G331737
TU377093 lncRNA downstream 186036 1585698 ~ 1586327 (+) False G331744
CI01000113_01376249_01385209.mRNA mRNA upstream 7843 1374067 ~ 1385402 (+) True CI01000113_01376249_01385209
CI01000113_01329811_01334714.mRNA mRNA upstream 58510 1328883 ~ 1334735 (+) True CI01000113_01329811_01334714
CI01000113_01321501_01326215.mRNA mRNA upstream 66895 1321356 ~ 1326350 (+) True CI01000113_01321501_01326215
CI01000113_01292096_01298082.mRNA mRNA upstream 93326 1291953 ~ 1299919 (+) True CI01000113_01292096_01298082
CI01000113_01127641_01134250.mRNA mRNA upstream 258764 1127641 ~ 1134481 (+) True CI01000113_01127641_01134250
CI01000113_01424978_01425704.mRNA mRNA downstream 25316 1424978 ~ 1425835 (+) False CI01000113_01424978_01425704
CI01000113_01507537_01509522.mRNA mRNA downstream 107875 1507537 ~ 1509522 (+) True CI01000113_01507537_01509522
CI01000113_01510550_01513751.mRNA mRNA downstream 110888 1510550 ~ 1514206 (+) True CI01000113_01510550_01513751
CI01000113_01515238_01529826.mRNA mRNA downstream 115509 1515171 ~ 1529951 (+) True CI01000113_01515238_01529826
CI01000113_01530888_01533572.mRNA mRNA downstream 131129 1530791 ~ 1533572 (+) True CI01000113_01530888_01533572
TU376961 other upstream 146672 1246291 ~ 1246573 (+) True G331615
TU376797 other upstream 471112 917735 ~ 922133 (+) True G331487
TU376780 other upstream 476708 913392 ~ 916537 (+) True G331470
TU376556 other upstream 1058624 334158 ~ 334621 (+) True G331260
TU376908 other downstream 24899 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 263123 1662785 ~ 1663255 (+) True G331767
TU377129 other downstream 268340 1668002 ~ 1668035 (+) True G331759
TU377145 other downstream 268340 1668002 ~ 1782301 (+) True G331759
TU377135 other downstream 426495 1828809 ~ 1828903 (+) True G331759

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050622 True 1943 mRNA 0.47 11 NC_007114.7 52953489 ~ 52980049 (+)