Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU376924 |
| length | 1083 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 3 |
| gene id | G331590 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000113 |
| NCBI id | null |
| chromosome length | 2886875 |
| location | 1249680 ~ 1251812 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU376965 | lncRNA | upstream | 14550 | 1229103 ~ 1235130 (+) | True | G331619 |
| TU376998 | lncRNA | upstream | 43418 | 1205979 ~ 1206262 (+) | True | G331652 |
| TU376997 | lncRNA | upstream | 43803 | 1205587 ~ 1205877 (+) | True | G331651 |
| TU376993 | lncRNA | upstream | 47377 | 1202089 ~ 1202303 (+) | True | G331647 |
| TU376992 | lncRNA | upstream | 50051 | 1199396 ~ 1199629 (+) | True | G331646 |
| TU376915 | lncRNA | downstream | 5376 | 1257188 ~ 1257858 (+) | True | G331583 |
| TU377007 | lncRNA | downstream | 24526 | 1276338 ~ 1278800 (+) | True | G331661 |
| TU377039 | lncRNA | downstream | 114006 | 1365818 ~ 1367922 (+) | True | G331692 |
| TU377049 | lncRNA | downstream | 137500 | 1389312 ~ 1389551 (+) | True | G331702 |
| TU376955 | lncRNA | downstream | 141433 | 1393245 ~ 1399662 (+) | True | G331611 |
| CI01000113_01127641_01134250.mRNA | mRNA | upstream | 115199 | 1127641 ~ 1134481 (+) | True | CI01000113_01127641_01134250 |
| CI01000113_01120464_01124821.mRNA | mRNA | upstream | 124649 | 1120398 ~ 1125031 (+) | True | CI01000113_01120464_01124821 |
| CI01000113_01110162_01112498.mRNA | mRNA | upstream | 137178 | 1110162 ~ 1112502 (+) | True | CI01000113_01110162_01112498 |
| CI01000113_01072283_01091398.mRNA | mRNA | upstream | 157950 | 1071905 ~ 1091730 (+) | True | CI01000113_01072283_01091398 |
| CI01000113_00997825_01005290.mRNA | mRNA | upstream | 244281 | 996863 ~ 1005399 (+) | True | CI01000113_00997825_01005290 |
| CI01000113_01292096_01298082.mRNA | mRNA | downstream | 40141 | 1291953 ~ 1299919 (+) | True | CI01000113_01292096_01298082 |
| CI01000113_01321501_01326215.mRNA | mRNA | downstream | 69544 | 1321356 ~ 1326350 (+) | True | CI01000113_01321501_01326215 |
| CI01000113_01329811_01334714.mRNA | mRNA | downstream | 77071 | 1328883 ~ 1334735 (+) | True | CI01000113_01329811_01334714 |
| CI01000113_01376249_01385209.mRNA | mRNA | downstream | 122255 | 1374067 ~ 1385402 (+) | True | CI01000113_01376249_01385209 |
| CI01000113_01424978_01425704.mRNA | mRNA | downstream | 173166 | 1424978 ~ 1425835 (+) | False | CI01000113_01424978_01425704 |
| TU376961 | other | upstream | 3107 | 1246291 ~ 1246573 (+) | True | G331615 |
| TU376797 | other | upstream | 327547 | 917735 ~ 922133 (+) | True | G331487 |
| TU376780 | other | upstream | 333143 | 913392 ~ 916537 (+) | True | G331470 |
| TU376556 | other | upstream | 915059 | 334158 ~ 334621 (+) | True | G331260 |
| TU376908 | other | downstream | 172749 | 1424561 ~ 1425441 (+) | True | G331578 |
| TU377162 | other | downstream | 410973 | 1662785 ~ 1663255 (+) | True | G331767 |
| TU377129 | other | downstream | 416190 | 1668002 ~ 1668035 (+) | True | G331759 |
| TU377145 | other | downstream | 416190 | 1668002 ~ 1782301 (+) | True | G331759 |
| TU377135 | other | downstream | 574345 | 1828809 ~ 1828903 (+) | True | G331759 |
