RNA id: TU376998


Basic Information

Item Value
RNA id TU376998
length 284
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G331652
representative True

Chromosome Information

Item Value
chromosome id CI01000113
NCBI id null
chromosome length 2886875
location 1205979 ~ 1206262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAACAATGGCTGTGTCCCAATTCATTTAAGAAAAATTTAGATTGCAAAGTAAGAAAGAAATTACAGTATTTTACACCTCACAATGAATATCAGTCAATTTTATTACGGTTACTTTTCTTAAATATGACATCCTTGATGAAGTATTCAGCCTTCAAATGCGACCTCCGGAGGACGCAGCCTCCGAAATGACGCAGCTCCTGTCCCCAAAGGAGTGTGTTTTTGGTTGTGAGGGAAAGATGACCTTTTTCAGCTTCCCAAAGAACCCAGCGTTAAGGGAACAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376997 lncRNA upstream 102 1205587 ~ 1205877 (+) True G331651
TU376993 lncRNA upstream 3676 1202089 ~ 1202303 (+) True G331647
TU376992 lncRNA upstream 6350 1199396 ~ 1199629 (+) True G331646
TU376991 lncRNA upstream 7381 1198396 ~ 1198598 (+) True G331645
TU376990 lncRNA upstream 8955 1196784 ~ 1197024 (+) True G331644
TU376965 lncRNA downstream 22841 1229103 ~ 1235130 (+) True G331619
TU376924 lncRNA downstream 43418 1249680 ~ 1251812 (+) True G331590
TU376915 lncRNA downstream 50926 1257188 ~ 1257858 (+) True G331583
TU377007 lncRNA downstream 70076 1276338 ~ 1278800 (+) True G331661
TU377039 lncRNA downstream 159556 1365818 ~ 1367922 (+) True G331692
CI01000113_01127641_01134250.mRNA mRNA upstream 71498 1127641 ~ 1134481 (+) True CI01000113_01127641_01134250
CI01000113_01120464_01124821.mRNA mRNA upstream 80948 1120398 ~ 1125031 (+) True CI01000113_01120464_01124821
CI01000113_01110162_01112498.mRNA mRNA upstream 93477 1110162 ~ 1112502 (+) True CI01000113_01110162_01112498
CI01000113_01072283_01091398.mRNA mRNA upstream 114249 1071905 ~ 1091730 (+) True CI01000113_01072283_01091398
CI01000113_00997825_01005290.mRNA mRNA upstream 200580 996863 ~ 1005399 (+) True CI01000113_00997825_01005290
CI01000113_01292096_01298082.mRNA mRNA downstream 85691 1291953 ~ 1299919 (+) True CI01000113_01292096_01298082
CI01000113_01321501_01326215.mRNA mRNA downstream 115094 1321356 ~ 1326350 (+) True CI01000113_01321501_01326215
CI01000113_01329811_01334714.mRNA mRNA downstream 122621 1328883 ~ 1334735 (+) True CI01000113_01329811_01334714
CI01000113_01376249_01385209.mRNA mRNA downstream 167805 1374067 ~ 1385402 (+) True CI01000113_01376249_01385209
CI01000113_01424978_01425704.mRNA mRNA downstream 218716 1424978 ~ 1425835 (+) False CI01000113_01424978_01425704
TU376797 other upstream 283846 917735 ~ 922133 (+) True G331487
TU376780 other upstream 289442 913392 ~ 916537 (+) True G331470
TU376556 other upstream 871358 334158 ~ 334621 (+) True G331260
TU376961 other downstream 40029 1246291 ~ 1246573 (+) True G331615
TU376908 other downstream 218299 1424561 ~ 1425441 (+) True G331578
TU377162 other downstream 456523 1662785 ~ 1663255 (+) True G331767
TU377129 other downstream 461740 1668002 ~ 1668035 (+) True G331759
TU377145 other downstream 461740 1668002 ~ 1782301 (+) True G331759

Expression Profile