CI01000133_01566113_01567594 (KCNA1A, KCNA1L, KCNA1.S, KCNA1)


Basic Information

Item Value
gene id CI01000133_01566113_01567594
gene name KCNA1A, KCNA1L, KCNA1.S, KCNA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000133
NCBI id null
chromosome length 2254871
location 1564218 ~ 1568902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000133_01566113_01567594.mRNA
ACATAAAAACACTAACATAATCAACCACCACAAACTCTCAGGTGTATTATTTGCAGTCTGATTTAAGTATTAAGTATCAATTTGTATGAGCAAAATAAGTAGATCATGCTGCTAGCAAAGCCAAGGTCACAGGTTTGAAAATGGAAATGCAGTTGTTTTTACTTCATCCAACCTTTAAAATGTACCTTTGTTGGTGAATGCAAATGACATCAGATTGCTTGAATCATATTAAATAATAATTTTGATTTAATCTTTTTTTTTTTTTTTTTTTTTTTCAATTTAGATGTTACCACATGTAGCACATTTTATGCTTCAAATACAAGTCTGCTCAGTGCTCCAAAAAAAAAAGATCCAAAAAAAAACATTTTTACTCTAAATGAATAACATTCTGGTTCAAGGTTGCATGCAAATTTGTATTTATTAGTAGATACTTGTTAATCTGTTTTTATGGCAATTTGTGAACAAAAAGACACACTAATGATAGAAACAAATACCATTTTAACAGGAATTTCTCCTTCAGCTGTAGTGTGTCCCATCAGATGTGTGGAAAAGGACATTTGGCAACATGCTGGAGTCTGTCTGCATTGCGCATTACACATCCACTCACTCACTCACCCACTCACTCTCGCTCTCTCACCCTCCCTCCCTCTCTCTCTCTTTCTCTCTCTCTCTCTGTTTGTGTCTCCACTGTTCTGCTGCACGGGTTTGAGGAGCACTGCAAGTTTGCTGTTGTCTGACGGCAGTAGGATGTGTATTGTGGATGTATAATATTCTTGCTGTATGAATGTGAGGCTGTAATGTGAGATCTATTTTTAATAACACATAGGAGGTTTTGCGCAGATCTTTCCTGCACTGTTCCTCAATCTGACTGCCCACGTAAGTACAAAGACAGTCATTTTATAACATCCCATTGCCATCATTTGGTATCACTCTCTGCATCAATCTGCATTATACATGCATAATGTTCATATTGGCAAATAGTGTCCTGATATTTGCTGAGAGCTAGTAAAAAATAAATATATTATTAATTATAATGTTTAGTACCTAAGAACCATATTGCATGTTTTGAGCATATATATATATATATATATATATATATAAATAATGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATAGAAACATTGAAACCTCAATCAGTGACATTTATGTTTTAACAGACACCAAGAGCATATGTTCACTAGACAAATCTGTCTCACAAGAAGATATGTTCTAACTGTTCTGTAGGGTTAAACTTGCTTTCAGTACACTTGGAAATCTATTTGACAAGCAAGTCCATTTCAAATTCATTTCACCCATTCAGATCAGATCCTTAGAATCGTATTAGATATCATTGTGCAGTCTTACCAGAACGCTACGTGCATTGTACTGGAATATCTTGCTAGCGGACTGAAGAAATTCACAGACATATTTTTTTTTTTTTTATCTTATACTGGCAAATCGTGATGGTCCTGTTGGGGACTTTGTGTTCTGAAAGACCCTTGGTTTTATGTTTGAATTCCAAAAGGAATATGATTCAAAATATACATTAGAGATCCTTCAAGATTGGTTCCAGTAGAAATTTCTTATCGCATCCCTGTGAATTTTCTATCTAGGTATAGGACATATGTCTATTCTGTCATGGTATCTGAGGTATCTCATTACTCCCCTTAATTTTCTGGCTGACTAGGTGAAGACATGAAGTAGGTGCAGTGGTCCATGGGACATGGAGATGGTCGACATTTGGTGGAACATGATGCTGGATGTCCTGTTGGGTCACTGACTATTCAAACTGCAGGGCGTTGGATGCGTACTCAACCCACCTGAACATCCACTGCCATCCAGTACTGCGAGTTTGATCTCCAGGATGACTGTGGTGGTTGCTGGAGATAATATAGACGAGACGTCCTCCACTCTGCAGGGGCAACCGCAGGACTCGCAGTATTCCCCCGAGTGCTGCGAGCGGGTGGTCATCAACATCTCAGGGCTGCGCTTTGAGACACAACTCAAGACGCTTGCCCAGTTCCCCGACACTCTACTAGGCAACCCCAAAAAAAGGATGCGCTACTTTGACCCTTTAAGGAACGAGTACTTCTTTGACAGAAACCGTCCCAGCTTTGATGCAATCCTCTACTACTATCAGTCAGGGGGAAGGTTAAGAAGACCCGTCAATGTACCCTTGGATATGTTCTCGGAGGAAATTAAGTTTTATGAGCTTGGAGAAGAAGCTATGGAAAAATTTAGAGAGGATGAGGGCTTTATTCGTGAGGAAGAGCGCCCCCTGCCGGAGAATGAGTTTCAGAGACAGATTTGGCTGCTTTTTGAGCATCCCGAGAGCTCAGGCCCCGCCAGAGGGATCGCGATTGTCTCCGTCATGGTTATTCTCATTTCTATCGTCATATTTTGTTTGGAGACTTTACCAGAGTTGAAAGAGGATCCACATGGACGGCTCCAGGTGATAGGCAACAGCACGTTCTACTACAAACCAAATATTTTTACCGACCCCTTCTTTGTTGTGGAGACACTCTGCATCATCTGGTTTTCTTTTGAGTTGATTGTCCGTTTTTTCGCTTGCCCAAGTAAACCTGCCTTCTTCAAAAACATGATGAACACAATTGACATAGTGTCCATCATTCCATATTTCATAACGCTCGGAACGGAGATGGCAGAGGACCCTGAGGGTGGAAAGGAGGTGAAGGGTGGAGGAGAGCAGGCCACGTCTCTTGCCATTCTCAGGGTTATCCGCTTGGTTCGGGTGTTTCGGATATTTAAGCTGTCCAGACACTCCAAGGGGCTTCAGATCTTGGGCCAGACTTTGAAAGCCAGCATGCGAGAGCTAGGACTCCTCATCTTTTTTCTTTTCATTGGCGTCATCTTGTTTTCCAGCGCGGTGTATTTTGCCGAGGCCGAAGAGAAGGATTCCTTCTTCACAAGTATCCCAGAAGCCTTCTGGTGGGCGGTGGTTTCGATGACAACCGTGGGGTATGGAGACATGTACCCTGTTACGATTGGGGGCAAGATAGTAGGCTCTCTATGTGCCATTGCTGGAGTGCTAACAATCGCGCTTCCAGTGCCTGTGATTGTGTCCAACTTTAACTATTTCTATCACAGAGAAACCGAAGGTGATGAACAGGCACAGCTCCTCACAGTGAGCAATCCGAACATCGCGTCAGACTCCAACTCCAGTCGTCGCAGCTCGTCGGTCGTCAGCAAGTCAGAATACATGGAGATTGACGATGACCTCAATAACAGCATTGATAATTTTCGAGAGGCGAACTTGCGAACTGGGAACTGCACAGTTGCAAATCAAAACTGTGTAAATAAAGGGAAGCGTCTCACAGATGTATAGATTTCCAGTGTCATTCTAGGCCATTACAAGACTGTACATAGTGTAGTCTAGTCATATATCAGAATGCTTAAACTGGACCTCTGATAATGTATTATTTCATTGCATATGTTTGATCTTAAGTCCACAAGAGTTGATTCTGTTTGAAGATTGGTAGTCTAAAATATGCCTATGGACACCAAATTTTATATAAGTAAAAGACAGAATAAAGGCCTGTTCACACTAAGAATGATAACTATAAAGATAATGATAAAGATATAGTTCTAAAAATCGTTCTAAAATATAAAAGAATAGCACTGTTCAAACCACAGCTATAACAATAATGATATAGAGAAACGATATTGCTGTGATCACTTTCAGAAAAATTTTTTTTTTCAGTTGTTGAACGATAAAACACTGACAGCCAATCAGAATCCATTCTAATTTATGGACTCGCATATTTAAAATGGCAGAGGACATTGCGGAGAAGTTAATCGCTGAGTTCCAGAAACCCCCTTTTCAAGGATACTTTAAAGAAAATGTATATATGGAAAACAATCGGTCATATCCTCAGAATAAATAGTGACGAATAGCATTAACGAAATATTCCAGGCTAGTAAACAGTGTAAAATAAAATTACCTCAGGTATCCAGTGCTAGTTTCGACAACACTTGCTTCCTTTGAAGTTGCAGTAAAAAAGACTAGCCGCTGTTTTTATTCCACTATATTGACTTCGCCAGCTAAATTCACTGCTAGATTAGATCGATTACACTAGCTGTTCACTCGAAACATAGCATGCTGAGGACATCTGCTGGTTAAAGCAGTGTAAATGCAACAAGAACAGCAATAACATGTCGTACACACTTTGAAACCGCAGCGCCTGAGCTTAGAATAAACTGAGCGTTATCGTTCGTTGGTGTGAACGCAAATATAGTTATCGCTATAGTTATCGTTCTTGCTGTGAACAGGCCTTAACTATTCATCGGATGGTTAGAGTACTTGGATATATAAATGACTTTACATTTTACGATGCACCTTATCCCAAAATATTATAAGTTATTCAGTGACAAAAATTAGATTTGCATGTAGAACAATTACTTTTTTGTACCATATGTTCATCATGTATTTATTTACTTGTTTATTTGCTCATTAAGGCTACTTTAATCCATTTACAAACTGAATGTTGATTAATTATGCAGATCATGGCATGTTTTTTGAAACGTTGAGGTCTGTTTGATATGGTACTATGTATCTTGCTTTAATTAATACATGAACTTCATCACATATAGCCAAGTCGACAGTACGACTCTCTTAAATTACAACCACTGCCCA

Function

symbol description
kcna1a Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in several cellular components, including dendrite; main axon; and neuronal cell body. Predicted to be integral component of membrane. Is expressed in several structures, including gill; heart; hindbrain; opercular flap; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in episodic ataxia type 1. Orthologous to human KCNA1 (potassium voltage-gated channel subfamily A member 1).
kcna1 Enables delayed rectifier potassium channel activity and disordered domain specific binding activity. Involved in several processes, including magnesium ion homeostasis; neuromuscular process; and potassium ion transmembrane transport. Located in juxtaparanode region of axon and paranode region of axon. Is integral component of plasma membrane. Part of voltage-gated potassium channel complex. Implicated in episodic ataxia type 1.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04874 KCNA1, KV1.1; potassium voltage-gated channel Shaker-related subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000133_01566113_01567594.mRNA True 4685 mRNA 0.39 1 1564218 1568902

Neighbor

gene id symbol gene type direction distance location
CI01000133_01534789_01536225 KCNA6, KCNA3.S, KCNA1 coding upstream 27690 1534590 ~ 1536528 (+)
CI01000133_01453263_01457636 NA coding upstream 105493 1453263 ~ 1458725 (+)
CI01000133_01444214_01450280 NA coding upstream 113831 1444214 ~ 1450387 (+)
CI01000133_01352323_01364807 KIAA0930.L, KIAA0930 coding upstream 199411 1352131 ~ 1364807 (+)
CI01000133_01316050_01344283 LARGE1, LARGE coding upstream 219740 1316050 ~ 1344478 (+)
CI01000133_01624531_01626174 NA coding downstream 55131 1624033 ~ 1626621 (+)
CI01000133_01687929_01695864 NA coding downstream 119027 1687929 ~ 1695864 (+)
CI01000133_01765414_01769257 RAB21 coding downstream 195370 1764272 ~ 1769257 (+)
CI01000133_01769960_01776601 RAB21 coding downstream 201058 1769960 ~ 1777581 (+)
CI01000133_01787325_01805253 TRIM24 coding downstream 217810 1786712 ~ 1805437 (+)
G345619 NA non-coding upstream 65490 1498507 ~ 1498728 (+)
G345604 NA non-coding upstream 94319 1469552 ~ 1469899 (+)
G345517 NA non-coding upstream 101628 1462287 ~ 1462590 (+)
G345508 NA non-coding upstream 102850 1460200 ~ 1461368 (+)
G345518 NA non-coding upstream 111610 1425968 ~ 1452608 (+)
G345676 NA non-coding downstream 19932 1588834 ~ 1589072 (+)
G345681 NA non-coding downstream 28726 1597628 ~ 1598141 (+)
G345637 NA non-coding downstream 32122 1601024 ~ 1601632 (+)
G345691 NA non-coding downstream 49946 1618848 ~ 1619061 (+)
G345651 NA non-coding downstream 61454 1630356 ~ 1632421 (+)
G344985 NA other upstream 1417037 142772 ~ 147181 (+)
G346486 NA other downstream 672951 2241853 ~ 2243321 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location