XLOC_001167


Basic Information

Item Value
gene id XLOC_001167
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 19530752 ~ 19538183 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003400
AAAATCTAAGTTTATTTGGTAAAGATTTACAGTCATTACATGCAACGCTTTGCTGTCAGAAGTGAAATAAATGTACAACATTTTTTTCAGGCTACTTTTTAGCCACCACAATGATGAAGGACCCAAAACATTGAAGCGTGTATGACGTCATTAGGGCGGTTTAGCTCAAGCTGGCCGGCTCGAATGACATTTGATCGTTACGTTCAAAAAGAGTGTAGTTCAGCGCACATTGAGGCTGGTTTTAATGTGATGGCATGTTATTACACGACTGTACGAAATATCAGATTACAAGGGACCGGACACATGGAAAGACACACCAAGTTAAAGGCATAGAAACAGACCTGCGTGAGGACAACACAGTCACCGCGGTCTGAATACATTGCGGTGGGCTGAATATCCGGTTCTTCAAAACAAACTCAAGGCAAACCCCCTCGGTCGGGGCAAGAGAAGGAAGGAGCCGATCGGTACGAGCCCACCACAGCAATGCGGGAACCACTGACCTCCGGGTGCTGATGGTCAGA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048869 cellular developmental process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060284 regulation of cell development biological_process
GO:0060290 transdifferentiation biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003400 True 521 lncRNA 0.46 3 19530752 19538183

Neighbor

gene id symbol gene type direction distance location
XLOC_001166 NA coding downstream 25712 19503860 ~ 19505040 (-)
XLOC_001165 kitb coding downstream 28374 19473028 ~ 19502378 (-)
XLOC_001164 lap3 coding downstream 99242 19418380 ~ 19431510 (-)
XLOC_001163 rbm47 coding downstream 127937 19353048 ~ 19402815 (-)
XLOC_001162 NA coding downstream 180857 19335193 ~ 19349895 (-)
XLOC_001168 ecpas coding upstream 24569 19562752 ~ 19599242 (-)
XLOC_001169 polr1e coding upstream 99129 19637312 ~ 19648227 (-)
XLOC_001170 apela coding upstream 129764 19667947 ~ 19673900 (-)
XLOC_001171 NA coding upstream 151461 19689644 ~ 19700958 (-)
XLOC_001172 tma16 coding upstream 221187 19759370 ~ 19764038 (-)
XLOC_001161 NA non-coding downstream 256464 19252358 ~ 19274288 (-)
XLOC_001159 NA non-coding downstream 417812 19110119 ~ 19112940 (-)
XLOC_001158 NA non-coding downstream 439523 19090419 ~ 19091229 (-)
XLOC_001173 BX323590.4 non-coding upstream 249098 19787281 ~ 19788211 (-)
XLOC_001175 NA non-coding upstream 465471 20003654 ~ 20023739 (-)
XLOC_001178 NA non-coding upstream 921092 20459275 ~ 20553132 (-)
XLOC_001180 NA non-coding upstream 1077026 20615209 ~ 20724351 (-)

Expression


Co-expression Network