CI01000158_00651772_00657903 (RHOF)


Basic Information

Item Value
gene id CI01000158_00651772_00657903
gene name RHOF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000158
NCBI id null
chromosome length 1938735
location 650335 ~ 658338 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000158_00651772_00657903.mRNA
AATCACTGCATTATGGCCTGTCTCATTCAGTGCTCTGTAGATCCACCTTGTGCAGACAGGAGCATGTGAAAAATAAAGGTTTTCAGACTTGGGAAGTAAACTCTCATGACCGGCTAGAGGGAGTGTCCTCATGTACTCCGCCTATAGTGATGGTGCAGACCATGTGTAGACAGGCACAGGAAAGACTCACATGTCACACAGCCTCAATTACAGTAGCACGCTCTGATCTGGGGTATACTTGAAAACACAGTCACATGGTTTGAAAAGAAAAGAAAAAAAGCAAGAGGAGGAGGAAGTGGGGACCGGATAGCAGCATGCTTACCTGGCAGAGTTTTAGTCTCACCGTATCCTCACCGATGAATTTACCTGACACTTCTGTGCACTTGGGCACCTATTGGAGGAACTGACTTGGCCGGTGCGGCCCGCAAAAAGGACATGACACAGAACGGCACTGTAGCCGGCAATGGCACTCAAGCTGATGCTCTCAAAATTGTGATCGTCGGAGACGGAGGATGCGGAAAGACATCCTTGTTAATGGTGTACGCCAAAGGAGATTTCCCAGAGAAATACGCTCCATCTGTGTTTGACAAATATGTCACCACTGTGTCTTATGGAGGGAAAGACATTCAGTTGAATCTCTACGACACAGCAGGCCAGGAAGACTATGATCGCTTGAGGCCTCTGTCGTATCAAGAAGTAAACCTCGTTATCATCTGCTATGATGTGACCAATCCAACGTCATTCGACAATGTCACAATAAAGTGGTACCCAGAAGTCCGTCATTTCTGCCGTGATGTCCCCATTATCTTGATAGGGTGCAAAACGGACCTGCGAAAAGACAAAGAGAAGACAAGGAAGCTCAAAGCCTTAGATATGGCGCCCATCACCTACCTCCAGGGTGAAGAGGTCCAGAAGCAAATGAACGCTGAGGTATACTTGGAGTGTTCGGCTAAATATAGAGAAAACGTTGAGGACATTTTCAGAGAAGCAACCAAGCGAGCGCTAGCGGCCAGAGCTAAAGCAAGACACCTTCACAAGAAGAAGAAACGCTGCACCATTCTGTGACCAGTCCTGGAAGAAATAGATTTTTTTCAAGTTTTTGTATATATGAATTGCAATATTTTTAAACATTTTGGATCCATCTGCAAAGCTTCTCAGAACTGTTTAAGCTTTCTCGAAGGAATATTTTTTAAAGACATGGGGTGTGCGTTTTCTCACAATCTTCCCACCAAGCAAGGCTTACTGTATGACAGAGATCACCACTGTGCATGCGATAAGTTTGTAACATCCATGCCACATCCTTCTGTTGGTGTTACTGATATGACTTAATGGAATTTTGCCTTCCATGATGATGGATCCAATAGGAGATGGAAAAACTGCTGCTGATATCTCAGGGACGACAAATACATATTACAGGAACATATTTGAAGTTTGGTTACAGTCTGTGTCGTGCACTGTTGTATAATAATGGTGTACTGTTGTAACGCACAACTAACTCATGTAACTGCCTTTATTATGACACTGGGGTGTAACATGTTTCTGTTGTGTAATTCATTTGATCTACTTGCGCAATAGTTACAGTTGAAATTTTAAACTTTGAATTACAGTATTTTGTCAGTCCACGTATTATATAAAGCTTTCAGAATTTTCTGTACACAAAAATAGGCCTACTGTGGTAAGTAGGCCTACTGAAATAAGCCTAAAGGCCCGTTCACACCAAAGACGATAGCTGTAACGATAGCGATATAGTTTTAAGAATCGTTATAAATATAAGAATAACATAGTCCACACCACAACTATAACGGCACAGAGAAACGATATCGTTGAATCATTTTCACAACTATTTTTCCAGCTGATGAACGATAAAAACATTGACAGCCAATCAGAATCCATTCTGCTTTAAAGAACACGAGTATTTAAAGTGGCAGGCGACAAACTGCGGCGCACGCAGTTATTATCGCTATAGTTATTTTTCTTGGTGTGAGCGGGCCTTAACTGTAGACCACCACCATTTCCATCATGTTAAGTAGAATTTCACTTTTTATTTCTTTCAGTATGGGGTTATTTACTATCCGTAATTTGTTCAGATCTCATATAGATGCCAGAAAGTGTTGAATCATTTATGCTGAAACCATTTGTCTGTTCCACCCTGTATGTAGATTGCACAATTAAACCTTCAATTGCCTTTTCGCCTACTGAAGGAAATTGTGTGTGAACAGGATAATGTCACTATTAAAATTCTGTAGCTCTTTTATATAGCAGTGTATTCATTTTACATTGGCACAGATAGTTTTCATTTTGCATGATGCAAATTTTTAGATTATAGGCAGACATATGACAGAAAATCTCTGCCTTGTCTGCAAAACAAACTTTGTCGTCAGAAAATACAAGTGATCTTGTTGTGGTTAGCACAAAAACTCCTGCCTAGCAGGATGCGACTGCATGTGGTAACGGAAGCCTCCAAGTACTGCTGCGTGTCAAAGAGCAAAGCTGAAGAATAAA

Function

symbol description
rhof Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated).

NR:

description
Rho-related GTP-binding protein RhoF

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG:

id description
K07872 RHOF, RIF; Ras homolog gene family, member F

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000158_00651772_00657903.mRNA True 2502 mRNA 0.41 5 650335 658338

Neighbor

gene id symbol gene type direction distance location
CI01000158_00638618_00641457 MORN3 coding downstream 8878 638515 ~ 641457 (-)
CI01000158_00618753_00629015 KDM2B coding downstream 21320 618684 ~ 629015 (-)
CI01000158_00608301_00616686 NA coding downstream 33454 607466 ~ 616881 (-)
CI01000158_00522039_00535779 NA coding downstream 114531 521745 ~ 535804 (-)
CI01000158_00453940_00462329 NA coding downstream 187926 453444 ~ 462409 (-)
CI01000158_00685933_00689194 CAR15 coding upstream 27577 685915 ~ 689433 (-)
CI01000158_00694202_00704844 IDD, DGCR2 coding upstream 35585 693923 ~ 704844 (-)
CI01000158_00706860_00708304 NA coding upstream 48082 706420 ~ 708505 (-)
CI01000158_00709034_00714645 DGCR14 coding upstream 50301 708639 ~ 714645 (-)
CI01000158_00717478_00721819 STAMBPA, STAMBP coding upstream 58953 717291 ~ 722084 (-)
G363891 NA non-coding downstream 10381 639684 ~ 639954 (-)
G363890 NA non-coding downstream 18775 631250 ~ 631560 (-)
G363889 NA non-coding downstream 19488 630439 ~ 630847 (-)
G363878 NA non-coding downstream 73367 576698 ~ 576968 (-)
G363743 NA non-coding upstream 1818 660156 ~ 663559 (-)
G363747 NA non-coding upstream 23712 682050 ~ 683825 (-)
G363898 NA non-coding upstream 75082 733420 ~ 733619 (-)
G363900 NA non-coding upstream 76226 734564 ~ 734800 (-)
G363901 NA non-coding upstream 76487 734825 ~ 735175 (-)
CI01000158_00286848_00307666 NA other downstream 334946 286545 ~ 307666 (-)
G364103 NA other upstream 797796 1452257 ~ 1501547 (-)
G364203 NA other upstream 1029628 1687966 ~ 1688828 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location