CI01000161_02498353_02528155


Basic Information

Item Value
gene id CI01000161_02498353_02528155
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000161
NCBI id null
chromosome length 3087367
location 2498299 ~ 2529154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000161_02498353_02528155.mRNA
CTTTATAATCAGCATCATTTTCTTTGTGTTGCAGGGTAATGCTTAGTCTCAGAAATGCCGTACGTAGATCGTCAGAATCGGATCTGTGGCTTTCTAGACATCGAGGAAGTGGAGAACAGCGGCAAGTTTTTACGACGCTATTTCATTCTGGACACACTGGAAGGCAGCCTGATGTGGTACATGGATAATCCTCAGAATCTTCCAGAAGGAACATCCAATGTCGGCTCCCTCAAACTAACATATATATCCAAGGTTAGCGATGCCACCAAATTGCGACCGAAGGCGGAGTTCTGCTTTGTCATCAATGCTGGAATGAGGAAGTTTTACTTGCAGGCGAATGATAAGCAAGATTTAGTGGAGTGGGTCAGTGCACTCAACAACGCAACCAAAATCACACAGTGTTATGATGCAGAGCAAGATCTTTTCGCCACTGAATGCAAAGATGTTAAGATGATTACAGCTGACAGTTTGTTTTGGGTCAGAGCCAGTATGTGTAGTGATGGCGTATTGATCAGCGTTTTTGGCCTGAAGGCAGTGAACGATGAACTGCCATCCCCACAGATGGTGCCGAAGTCAGGTGAGCAGGTGGCTCATAATACAGCAGAAGCGTGTGTGGACACGTCGGCTGCAGCAAAACAAGTGTCCTACAAGACCGAGATCATCGCAGGAGTGCCCATCATCACTACCACACAGGAAAAGGGCGAAGGTCAGAATGGTGCAGACCGGAGCGGGGTGAGGAAACCTCAGGGTCCGCTGCCGTATTACTTGAGCCGAAGTAATCAGGACCAGTCGATCATAAAATACGGATATTGTGTCAAACAGGGAGCTGTGATGAAAAACTGGAAAAGGAGATATTTCATGTTGGATGACAATGCACTCAGCTACTTCAAATCAGAAATGGACCGTGAACCGTTACGAGTTGTTCCTCTGAAAGAAATCAATAAGGTTCAGGAGTGTAAACAAAGTGACTTGATGATGAGGGACAATCTTTTTGAACTGGTTACTACCTCAAGAACTTTCTACATTCAGTCGGACAGCCCAGAGGAGATGCACGGCTGGATCAAGGCTATCTCTGGGGCCATAGTGGCCCAACGGGGTCCTGGACGTTCAGCAGCCTCTATGCGTCAGGCCAGACGGCTCTCAAATCCTTGTATACAGAGGTATACATCCTGCAATGGTGAATGCAGCACGTATGTGTTGAGATCAAACCCCTCGCGCTTTGTCCCTGTTTGTTTGCACTCAGCCCCCTGCTTAGAGTTTAGAGACTTGTAGACCTTGATCTAGATCTGAGCAGGGTAGAGCTGTCTCACCTAAACAATCCAACCCCGCAGACAAACCGCACTAAAACCAGCCCTCATGTCATGCTAGAGTGACCTTTGACACCCATCATCCCCATTTTCTCTTTTAATATACTTTTGATACATCCATACTAAACATCTCATCCTCTCATCTGATTACCCACACTTCTGCGTAGGGCTCAGTAATGCAAATATTTGTTAAGTGATTTACAGAGAGACATTTGAATGTCTTTTACTAGAGTAAATGTCAAAAATCAACAATAATTACAGAAATTGAATAATCAAATGTAAAATAACATTGCATAATCTTCACTGTATATATTGAATATAGATTAATCCTTTTTAAAGCTACAAAAGTTATTCAGTCAAGATCAGTGAGTGATTTTTTTTTTTTTTTTTTTTCTCTGTATTAACTTTAATGATGGCAGCAGGTAGGCTATATTAGGCTGCTGTCACTTTTAAGACCAAATTCAGTATATTTCATCTAATATATTGACACACATACGATTTCTTTCTAAACCGTTTACATTCGGTTAAGACATAACTGACTGTGTTTACTATGATACTCGCCAAGATGGCCATTTTGACATACTTTTATGTGTATTTGTCCGTTCAAGCGTGAGAAGAGTATCCGTGCGCTCTCTGTGTGCGCGCTATGGATGAAGCTCCATATGCCTCACAACAGACGCGCCTCATTCTTATGTTCAAGGCGGCAGTGCAAAACTGTGAATCTAATCACCACACAGGCAAAAAGTACACTTCAAGAATAGATACATTAACAAAGGTTTGAGACAAATTATGTAATTTAATGGAAAACTATGTGAGTGGCGCTCTGTGGCACGGCAGGATTTTGAACAGCTCTGCGCTTGTGCGACCCCCTTTATTCTTAATCATCTGTGTTTTGCAACTAACGTTAATATTATCTTAACATTCAGAGTTACATTAACAATGTGCTGTGCCGCCACATGTCAAA

Function

NR:

description
pleckstrin-like domain-containing family A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000161_02498353_02528155.mRNA True 2271 mRNA 0.43 12 2498299 2529154

Neighbor

gene id symbol gene type direction distance location
CI01000161_02454755_02478611 NA coding upstream 19657 2454755 ~ 2478642 (+)
CI01000161_02393936_02394556 NA coding upstream 103608 2393880 ~ 2394691 (+)
CI01000161_02200369_02200984 GRID1 coding upstream 297042 2199881 ~ 2201257 (+)
CI01000161_02055833_02102680 NA coding upstream 395513 2054884 ~ 2102786 (+)
CI01000161_01997049_01997919 NA coding upstream 499510 1997049 ~ 1998789 (+)
CI01000161_02552972_02601762 HTRA1B, HTRA1, HTRA1A coding downstream 23818 2552972 ~ 2601762 (+)
CI01000161_02630107_02651623 NA coding downstream 100953 2630107 ~ 2651802 (+)
CI01000161_02655039_02665939 MGC84763, GET4, GET4.S coding downstream 125816 2654970 ~ 2665939 (+)
CI01000161_02851421_02855702 NA coding downstream 321533 2850687 ~ 2856048 (+)
CI01000161_02994719_03008186 SAMD14 coding downstream 465565 2994719 ~ 3008281 (+)
G367713 NA non-coding upstream 12821 2485175 ~ 2485478 (+)
G367710 NA non-coding upstream 15563 2482330 ~ 2482736 (+)
G367650 NA non-coding upstream 81366 2406085 ~ 2416933 (+)
G367673 NA non-coding upstream 111931 2386082 ~ 2386368 (+)
G367636 NA non-coding upstream 141350 2313483 ~ 2356949 (+)
G367748 NA non-coding downstream 88885 2618039 ~ 2623869 (+)
G367752 NA non-coding downstream 114992 2644146 ~ 2645519 (+)
G367754 NA non-coding downstream 141715 2670869 ~ 2671228 (+)
G367789 NA non-coding downstream 214827 2743981 ~ 2744203 (+)
G367792 NA non-coding downstream 228970 2758124 ~ 2758337 (+)
CI01000161_01387036_01388147 LSM5 other upstream 1104680 1387012 ~ 1388622 (+)
CI01000161_01272798_01288327 NA other upstream 1209291 1272798 ~ 1289008 (+)
G366441 NA other upstream 1500077 997902 ~ 998222 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location