G367650


Basic Information

Item Value
gene id G367650
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000161
NCBI id null
chromosome length 3087367
location 2406085 ~ 2416933 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU419564
TGTGTGAGATTTAACAGGACTCCAATGATGGCTCGCATACAGTCTTCTACGGCTTTCCCCACATTGCTGTTGCTGCAGTAGGGCAGCGGCGTGCCTGACGAGCACAGGCCTCTGTTCACCTCTCGACTGTACCTCTGGATCATCTCCTCACAGTGCCGTAACGCCTTCGCTGAAGACACTATGAGTTGAGAGTCCTTGTACGCAATCAGGTAGGCCTGGTTTTCTGGATTGTGAACAGTTACACTTTCTAGAACACGGAGACATCTCTCAGCCCCCCACAATGAGGCCACTAGGTTCTCCTTATCATCCTCTCTGCTCAGGTTCTCGACACACTCTTTAACTTTATCTACAATGTGGTCCAGGCCTCCTAGAAGCCGGAGTTCTTCTTTAAACCAATCCCCCGCTCTCTTCGACGTCAATGACAACAACGTCTCCATGGCTAAATGTCCCGTCGTGATATTCTCCAAATCGAGATGCTTATTGTGGACGGTTTCACAGAGTTTGCGAATCTTTTCTTTCACTTTGTTCATCTCTTTTGTCGTCAACTGATCAGCAATGGATTTGTCCTGTTCTAATTCCAGTAAACGAATCATCAGATCCAAACTGGCCCGATCCAGGTCCATATTCAAGCGGTCCCGACTGAGAATGTACATAAGAGAGGCCGTACA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU419564 True 668 lncRNA 0.48 5 2406085 2416933

Neighbor

gene id symbol gene type direction distance location
CI01000161_02393936_02394556 NA coding upstream 11394 2393880 ~ 2394691 (+)
CI01000161_02200369_02200984 GRID1 coding upstream 204828 2199881 ~ 2201257 (+)
CI01000161_02055833_02102680 NA coding upstream 303299 2054884 ~ 2102786 (+)
CI01000161_01997049_01997919 NA coding upstream 407296 1997049 ~ 1998789 (+)
CI01000161_01907250_01908821 NA coding upstream 497145 1907250 ~ 1908940 (+)
CI01000161_02454755_02478611 NA coding downstream 37822 2454755 ~ 2478642 (+)
CI01000161_02498353_02528155 NA coding downstream 81366 2498299 ~ 2529154 (+)
CI01000161_02552972_02601762 HTRA1B, HTRA1, HTRA1A coding downstream 136039 2552972 ~ 2601762 (+)
CI01000161_02630107_02651623 NA coding downstream 213174 2630107 ~ 2651802 (+)
CI01000161_02655039_02665939 MGC84763, GET4, GET4.S coding downstream 238037 2654970 ~ 2665939 (+)
G367673 NA non-coding upstream 19717 2386082 ~ 2386368 (+)
G367636 NA non-coding upstream 49136 2313483 ~ 2356949 (+)
G367625 NA non-coding upstream 114523 2283135 ~ 2291562 (+)
G367627 NA non-coding upstream 115206 2290273 ~ 2290879 (+)
G367450 NA non-coding upstream 189590 2216209 ~ 2216495 (+)
G367710 NA non-coding downstream 65397 2482330 ~ 2482736 (+)
G367713 NA non-coding downstream 68242 2485175 ~ 2485478 (+)
G367748 NA non-coding downstream 201106 2618039 ~ 2623869 (+)
G367752 NA non-coding downstream 227213 2644146 ~ 2645519 (+)
G367754 NA non-coding downstream 253936 2670869 ~ 2671228 (+)
CI01000161_01387036_01388147 LSM5 other upstream 1012466 1387012 ~ 1388622 (+)
CI01000161_01272798_01288327 NA other upstream 1117077 1272798 ~ 1289008 (+)
G366441 NA other upstream 1407863 997902 ~ 998222 (+)

Expression


Co-expression Network