XLOC_011862 (si:ch73-340m8.2)


Basic Information

Item Value
gene id XLOC_011862
gene name si:ch73-340m8.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 5829851 ~ 5860222 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023447
ATCAGTCTGCAAGAGTGAACACAACGCAAGCAGATATGACTGGTGAACATGGGGAATTGTGAATGCAAACCTAAATGCTGCTGTCCATGCTGTCCGTGCTGTCTAACAAAAGACCAGCAAGCGTCAGTCAACCGCGACAGAGTCTACACTTCAATCTACAGCTATCCTTCACGCACGATATGGGACCTGAATCTCAGGAAAGGAGATATTCTGGAAGTGACGGGAGAAACTGAGTACTGGCTGTATGTTAGGAGGCGAACTGCGAAAACTGACAAATCGAAAAGCTTCATTGAGGAACATGGTTACGTTCCTAAAGATTTCGTCAAGCCGCTGGACAGCGTAGAGGCCGAGCCATGGTATTTTGAGAATGTTAAAACGCGTGTAGAGGCCAAAAGATGCCTGCTGAGACCAGAGAACAAAGAGGGAGCGTTTCTCGTCTGGAAATGTGatgaaaataatcattattatttatcagtgaaAAATGGCCCTCATGCACGACATTACCGGATCAAGCAGGGAGAAAACGACCAGCAGTTTTTCCTCGTTCATCACACAACCTTCCAGAGCCTCCGCAAGCTCATCGAGTTTTACTCCAAACATGAAGGAGGACTCTGTGCCAAACTTCATGAAGCCTGTGTGAAGCTGGATCAGCCGGTTCCTCAGACTCTGTCATTTGACAGCAAATGTGAAATAGACAGAAGTTCACTCACCAAACAACAGAAACTCGGCAGCGGGGAGTTTGCAGACGTGTGGCAGGGGCTTTGGAACAACACAACAGAAGTAGCCATCAAAGAGTTCAAGGGTGTCAATTATTCAGACATCCAAACAGAGATTGAAATCATGAAGGACCTGCATCACGAGCGCTTGCTGAAGCTCTACGCTGTGTGTACCACAAGTCAACCAATGTGTATAGTCACGGAGCTCATGAAAAACGGCAGCTTAAAGACATTTCTATTACgtCACAAGGAGAAACAAGACCTAGAGTTTTCTCTCATGCTGGATTTTGCTATCCAGATAACAGAAGGGATGATTTACATTGAGAATAAAATAGTTCACCGGGATCTGAGAGCCGAGAACATTCTGCTCACCGAGATGCAGTCCTGCAAAATTGCCGACTTCGGACTCGCTCAAGTTAACAGACCTGGAAACCAAAGGATTTCTTCAGATGTCAGACTTCCGGTGAAATGGATGGCTCCAGAGATATTCGACAACGGCGAGTACACGAGCAAGAGCGACGTCTGGTCCTTCGGCATCCTTTTAACTGAAATTGTCACATATGGAGATGACCCATACCCTGGTCAAGACAAAATGTCGTGTGTTCGAGGGATTCAGCGAGGAGAGCGGATGCCCCGACCGGCCGGCTGTCCTGAATCGCTTTACGGCATTATGCTCCTGTGCTGGAAGGCAAACCCTAAGGAGAGACCCACATTTACTGAGCTGCGGGAGATGCTGATGGCTCTCATCCATGAGCCTGTTTCTGAACTGGAGTAGACTGGAGTAGGCATAGCCTACATGTAACTAACACATATAAATTGCGG

Function

symbol description
si:ch73-340m8.2 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane.

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-209 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000040258

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023447 True 1538 mRNA 0.47 9 5829851 5860222

Neighbor

gene id symbol gene type direction distance location
XLOC_011861 si:dkey-100n19.2 coding downstream 60655 5756547 ~ 5769196 (-)
XLOC_011860 xkr6a coding downstream 97552 5662379 ~ 5732299 (-)
XLOC_011859 NA coding downstream 175839 5651111 ~ 5654012 (-)
XLOC_011858 enpp4 coding downstream 219337 5599014 ~ 5610514 (-)
XLOC_011857 clic5a coding downstream 246506 5566138 ~ 5583345 (-)
XLOC_011863 gckr coding upstream 2928 5863150 ~ 5878032 (-)
XLOC_011864 NA coding upstream 20855 5881077 ~ 5884928 (-)
XLOC_011865 NA coding upstream 29302 5889524 ~ 5893014 (-)
XLOC_011866 NA coding upstream 101589 5961811 ~ 5973411 (-)
XLOC_011867 NA coding upstream 107027 5967249 ~ 5967346 (-)
XLOC_011856 NA non-coding downstream 265720 5452313 ~ 5564131 (-)
XLOC_011855 NA non-coding downstream 403393 5157371 ~ 5426458 (-)
XLOC_011854 NA non-coding downstream 686810 5142385 ~ 5143041 (-)
XLOC_011848 NA non-coding downstream 2000025 3823109 ~ 3829826 (-)
XLOC_011868 CU571076.1 non-coding upstream 153333 6013555 ~ 6013671 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_01606611_01612756 BLK coding CI01000310 null 1606376 ~ 1612756 (-)