RNA id: TCONS_00023447


Basic Information

Item Value
RNA id TCONS_00023447
length 1538
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_011862
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 5829851 ~ 5860222 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGTCTGCAAGAGTGAACACAACGCAAGCAGATATGACTGGTGAACATGGGGAATTGTGAATGCAAACCTAAATGCTGCTGTCCATGCTGTCCGTGCTGTCTAACAAAAGACCAGCAAGCGTCAGTCAACCGCGACAGAGTCTACACTTCAATCTACAGCTATCCTTCACGCACGATATGGGACCTGAATCTCAGGAAAGGAGATATTCTGGAAGTGACGGGAGAAACTGAGTACTGGCTGTATGTTAGGAGGCGAACTGCGAAAACTGACAAATCGAAAAGCTTCATTGAGGAACATGGTTACGTTCCTAAAGATTTCGTCAAGCCGCTGGACAGCGTAGAGGCCGAGCCATGGTATTTTGAGAATGTTAAAACGCGTGTAGAGGCCAAAAGATGCCTGCTGAGACCAGAGAACAAAGAGGGAGCGTTTCTCGTCTGGAAATGTGatgaaaataatcattattatttatcagtgaaAAATGGCCCTCATGCACGACATTACCGGATCAAGCAGGGAGAAAACGACCAGCAGTTTTTCCTCGTTCATCACACAACCTTCCAGAGCCTCCGCAAGCTCATCGAGTTTTACTCCAAACATGAAGGAGGACTCTGTGCCAAACTTCATGAAGCCTGTGTGAAGCTGGATCAGCCGGTTCCTCAGACTCTGTCATTTGACAGCAAATGTGAAATAGACAGAAGTTCACTCACCAAACAACAGAAACTCGGCAGCGGGGAGTTTGCAGACGTGTGGCAGGGGCTTTGGAACAACACAACAGAAGTAGCCATCAAAGAGTTCAAGGGTGTCAATTATTCAGACATCCAAACAGAGATTGAAATCATGAAGGACCTGCATCACGAGCGCTTGCTGAAGCTCTACGCTGTGTGTACCACAAGTCAACCAATGTGTATAGTCACGGAGCTCATGAAAAACGGCAGCTTAAAGACATTTCTATTACgtCACAAGGAGAAACAAGACCTAGAGTTTTCTCTCATGCTGGATTTTGCTATCCAGATAACAGAAGGGATGATTTACATTGAGAATAAAATAGTTCACCGGGATCTGAGAGCCGAGAACATTCTGCTCACCGAGATGCAGTCCTGCAAAATTGCCGACTTCGGACTCGCTCAAGTTAACAGACCTGGAAACCAAAGGATTTCTTCAGATGTCAGACTTCCGGTGAAATGGATGGCTCCAGAGATATTCGACAACGGCGAGTACACGAGCAAGAGCGACGTCTGGTCCTTCGGCATCCTTTTAACTGAAATTGTCACATATGGAGATGACCCATACCCTGGTCAAGACAAAATGTCGTGTGTTCGAGGGATTCAGCGAGGAGAGCGGATGCCCCGACCGGCCGGCTGTCCTGAATCGCTTTACGGCATTATGCTCCTGTGCTGGAAGGCAAACCCTAAGGAGAGACCCACATTTACTGAGCTGCGGGAGATGCTGATGGCTCTCATCCATGAGCCTGTTTCTGAACTGGAGTAGACTGGAGTAGGCATAGCCTACATGTAACTAACACATATAAATTGCGG

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0030154 cell differentiation biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-209 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in cell differentiation; innate immune response; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be extrinsic component of cytoplasmic side of plasma membrane.

Ensembl:

ensembl_id ENSDART00000058894

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024816 lncRNA downstream 175839 5651111 ~ 5654012 (-) True XLOC_011859
TCONS_00024815 lncRNA downstream 176015 5651111 ~ 5653836 (-) False XLOC_011859
TCONS_00024814 lncRNA downstream 265720 5481849 ~ 5564131 (-) True XLOC_011856
TCONS_00024813 lncRNA downstream 265732 5452313 ~ 5564119 (-) False XLOC_011856
TCONS_00024812 lncRNA downstream 668821 5157371 ~ 5161030 (-) False XLOC_011855
TCONS_00024524 lncRNA upstream 20855 5881077 ~ 5884928 (-) True XLOC_011864
TCONS_00024525 lncRNA upstream 29302 5889524 ~ 5893014 (-) True XLOC_011865
TCONS_00024817 lncRNA upstream 101589 5961811 ~ 5964110 (-) False XLOC_011866
TCONS_00024818 lncRNA upstream 101589 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024819 lncRNA upstream 364651 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00023446 mRNA downstream 60655 5756547 ~ 5769196 (-) True XLOC_011861
TCONS_00023444 mRNA downstream 97552 5662379 ~ 5732299 (-) False XLOC_011860
TCONS_00023443 mRNA downstream 219337 5599014 ~ 5610514 (-) True XLOC_011858
TCONS_00023442 mRNA downstream 246506 5566138 ~ 5583345 (-) True XLOC_011857
TCONS_00023440 mRNA downstream 405676 5221331 ~ 5424175 (-) False XLOC_011855
TCONS_00023448 mRNA upstream 2928 5863150 ~ 5878032 (-) True XLOC_011863
TCONS_00023452 mRNA upstream 156021 6016243 ~ 6076084 (-) False XLOC_011869
TCONS_00023453 mRNA upstream 156444 6016666 ~ 6076266 (-) True XLOC_011869
TCONS_00023454 mRNA upstream 253458 6113680 ~ 6198823 (-) False XLOC_011870
TCONS_00023455 mRNA upstream 253904 6114126 ~ 6202816 (-) False XLOC_011870
TCONS_00023445 other downstream 98152 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023441 other downstream 533290 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023424 other downstream 2538395 3291340 ~ 3291456 (-) True XLOC_011846
TCONS_00023401 other downstream 3664081 2165656 ~ 2165770 (-) True XLOC_011832
TCONS_00023378 other downstream 5624541 205194 ~ 205310 (-) True XLOC_011808
TCONS_00023449 other upstream 102753 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023450 other upstream 107027 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023451 other upstream 153333 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023473 other upstream 731008 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023487 other upstream 1098388 6958610 ~ 6958730 (-) True XLOC_011884

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_01606611_01612756.mRNA True 1669 mRNA 0.43 9 CI01000310 1606376 ~ 1612756 (-)