Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00023455 |
| length | 3201 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 30 |
| gene id | XLOC_011870 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007128.7 |
| NCBI id | CM002901.2 |
| chromosome length | 53461100 |
| location | 6113680 ~ 6202816 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045087 | innate immune response | biological_process |
| GO:0042127 | regulation of cell population proliferation | biological_process |
| GO:0045765 | regulation of angiogenesis | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0030155 | regulation of cell adhesion | biological_process |
| GO:0038083 | peptidyl-tyrosine autophosphorylation | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0030500 | regulation of bone mineralization | biological_process |
| GO:2000249 | regulation of actin cytoskeleton reorganization | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0002688 | regulation of leukocyte chemotaxis | biological_process |
| GO:0030334 | regulation of cell migration | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0007172 | signal complex assembly | biological_process |
| GO:0007173 | epidermal growth factor receptor signaling pathway | biological_process |
| GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane | cellular_component |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005925 | focal adhesion | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0004715 | non-membrane spanning protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080207-1 | Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in several processes, including angiogenesis; epidermal growth factor receptor signaling pathway; and innate immune response. Predicted to act upstream of or within several processes, including regulation of actin cytoskeleton reorganization; regulation of bone mineralization; and signal complex assembly. Predicted to be located in cell junction; cell projection; and cytoskeleton. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in breast cancer and hypertension. Orthologous to human PTK2B (protein tyrosine kinase 2 beta). |
| ensembl_id | ENSDART00000151908 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00024818 | lncRNA | downstream | 140715 | 5961811 ~ 5973411 (-) | False | XLOC_011866 |
| TCONS_00024817 | lncRNA | downstream | 150016 | 5961811 ~ 5964110 (-) | False | XLOC_011866 |
| TCONS_00024525 | lncRNA | downstream | 221112 | 5889524 ~ 5893014 (-) | True | XLOC_011865 |
| TCONS_00024524 | lncRNA | downstream | 229198 | 5881077 ~ 5884928 (-) | True | XLOC_011864 |
| TCONS_00024816 | lncRNA | downstream | 460114 | 5651111 ~ 5654012 (-) | True | XLOC_011859 |
| TCONS_00024819 | lncRNA | upstream | 22057 | 6224873 ~ 6280430 (-) | False | XLOC_011871 |
| TCONS_00024820 | lncRNA | upstream | 22057 | 6224873 ~ 6281640 (-) | False | XLOC_011871 |
| TCONS_00024821 | lncRNA | upstream | 42591 | 6245407 ~ 6263082 (-) | True | XLOC_011871 |
| TCONS_00024822 | lncRNA | upstream | 1262024 | 7464840 ~ 7466352 (-) | True | XLOC_011892 |
| TCONS_00024526 | lncRNA | upstream | 1306242 | 7509058 ~ 7511552 (-) | False | XLOC_011895 |
| TCONS_00023453 | mRNA | downstream | 37860 | 6016666 ~ 6076266 (-) | True | XLOC_011869 |
| TCONS_00023452 | mRNA | downstream | 38042 | 6016243 ~ 6076084 (-) | False | XLOC_011869 |
| TCONS_00023448 | mRNA | downstream | 236094 | 5863150 ~ 5878032 (-) | True | XLOC_011863 |
| TCONS_00023447 | mRNA | downstream | 253904 | 5829851 ~ 5860222 (-) | True | XLOC_011862 |
| TCONS_00023446 | mRNA | downstream | 344930 | 5756547 ~ 5769196 (-) | True | XLOC_011861 |
| TCONS_00023457 | mRNA | upstream | 72390 | 6275206 ~ 6296111 (-) | True | XLOC_011872 |
| TCONS_00023458 | mRNA | upstream | 129178 | 6331994 ~ 6349044 (-) | True | XLOC_011873 |
| TCONS_00023461 | mRNA | upstream | 155344 | 6358160 ~ 6382392 (-) | False | XLOC_011874 |
| TCONS_00023460 | mRNA | upstream | 155344 | 6358160 ~ 6382392 (-) | False | XLOC_011874 |
| TCONS_00023459 | mRNA | upstream | 155344 | 6358160 ~ 6382392 (-) | True | XLOC_011874 |
| TCONS_00023451 | other | downstream | 100455 | 6013555 ~ 6013671 (-) | True | XLOC_011868 |
| TCONS_00023450 | other | downstream | 146780 | 5967249 ~ 5967346 (-) | True | XLOC_011867 |
| TCONS_00023449 | other | downstream | 151061 | 5962975 ~ 5963065 (-) | True | XLOC_011866 |
| TCONS_00023445 | other | downstream | 382427 | 5670918 ~ 5731699 (-) | True | XLOC_011860 |
| TCONS_00023441 | other | downstream | 817565 | 5243340 ~ 5296561 (-) | True | XLOC_011855 |
| TCONS_00023473 | other | upstream | 388414 | 6591230 ~ 6600911 (-) | False | XLOC_011879 |
| TCONS_00023487 | other | upstream | 755794 | 6958610 ~ 6958730 (-) | True | XLOC_011884 |
| TCONS_00023504 | other | upstream | 1301293 | 7504109 ~ 7505978 (-) | True | XLOC_011894 |
| TCONS_00023505 | other | upstream | 1440715 | 7643531 ~ 7672760 (-) | False | XLOC_011896 |
| TCONS_00023511 | other | upstream | 1609559 | 7812375 ~ 7818925 (-) | True | XLOC_011899 |
