RNA id: TCONS_00024822


Basic Information

Item Value
RNA id TCONS_00024822
length 414
lncRNA type intronic
GC content 0.39
exon number 2
gene id XLOC_011892
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7464840 ~ 7466352 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCAGCAGGCTCCATTTTGCCGAAGAAAGGACATAAACAAAATCGGGGAGAAAATCTGTGTGTAAATAATGTGAATGTGTTTGAGTACAGATCAATTTGGTGCTGCTAAAGAGAATGGATTTTGAACTGAACAAAGTTTGTGTTTGATGATCTTCATTGCTGAGTCAGAGAGCACTGGCTGTAAAATGAGTCTctatgaaagagagaaagagggagttTCTGTTACCAGgtgcaaagcagcatttccagaacctagctgtgtgtctatgaagagtgatgCATCTTTACCTGTTCCCCCTAATCTCAGCGATAAAGCTTCAGACTTTGAGTAAGTATAAATCAGATTTATCTGCTGCATCACCCCCCCTTTTCTGTTCAatggaaataagatttttttcagcacatttctaatc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024820 lncRNA downstream 1183200 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024819 lncRNA downstream 1184410 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024821 lncRNA downstream 1201758 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024818 lncRNA downstream 1491429 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024817 lncRNA downstream 1500730 5961811 ~ 5964110 (-) False XLOC_011866
TCONS_00024526 lncRNA upstream 42706 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00024823 lncRNA upstream 42804 7509156 ~ 7512065 (-) False XLOC_011895
TCONS_00024824 lncRNA upstream 42804 7509156 ~ 7512071 (-) False XLOC_011895
TCONS_00024825 lncRNA upstream 42804 7509156 ~ 7534302 (-) False XLOC_011895
TCONS_00024826 lncRNA upstream 61879 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00023499 mRNA downstream 7110 7450703 ~ 7457730 (-) False XLOC_011891
TCONS_00023498 mRNA downstream 7142 7443479 ~ 7457698 (-) False XLOC_011891
TCONS_00023496 mRNA downstream 24443 7436065 ~ 7440397 (-) True XLOC_011890
TCONS_00023495 mRNA downstream 28074 7380550 ~ 7436766 (-) False XLOC_011890
TCONS_00023494 mRNA downstream 93276 7364911 ~ 7371564 (-) True XLOC_011889
TCONS_00023500 mRNA upstream 5635 7471987 ~ 7484354 (-) False XLOC_011891
TCONS_00023501 mRNA upstream 5652 7472004 ~ 7473890 (-) True XLOC_011891
TCONS_00023502 mRNA upstream 22883 7489235 ~ 7496341 (-) False XLOC_011893
TCONS_00023503 mRNA upstream 23895 7490247 ~ 7501916 (-) True XLOC_011893
TCONS_00023507 mRNA upstream 261112 7727464 ~ 7733037 (-) True XLOC_011897
TCONS_00023487 other downstream 506110 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 863929 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023451 other downstream 1451169 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 1497494 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 1501775 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023504 other upstream 37757 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023505 other upstream 177179 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 346023 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 764079 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 900353 8366705 ~ 8366816 (-) True XLOC_011904

Expression Profile

//