XLOC_011897 (stx11a)


Basic Information

Item Value
gene id XLOC_011897
gene name stx11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7727464 ~ 7733037 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023507
AGTGATACCACAGGTGCAAGGTGTAAACTGTACTCTACTATGGTAAATGACTCCGAGTGAACTCCTTATAATTAGACTTGAGTAAACACGGGTACTTTCGTGCTTTGACTTGTCGGAAACTCCCACAAGTCAGTCATTCAAGTGCAACGTTATTTCCTGCAGCGATGTGTGTGACATGAGGTGATGCGCATAGGGAAACGATAAAAGCTCACGTTTATAGCGTTTGCATTGAAAGGAGGGACATGAAATAAGGAAAGATGCGAGACAGGCTGGTTGAACTGGAAGGTATCGCCACCAAAATCATCAAAGAAGAAGAAGACCAAGCAGACAGTGGAGATGACGTGGACAATGATGAATTTGAGCAGCACGCGGTGGTGTTCGAGGGCGAGGACATCATGGAGGACGCCTTCAAGGAAGCCCAATCCATCCAGAAAGAAATCGCCCAGCTCCGAATGGAGGTGAAGAGGCTGGGTAAGCAGAACACGCGCTTTCTCACCTCCGTCAGACGTATTAGCAGCATCAAGCGCGACTCGAATACCATTGCACGCGGCATCAAAACCAAAGGGGAGAGCCTGTATGCACGGATACAGAAGCTGGATGGTCTTTGCAAAGAGTTGGAGGAGAAACAAGGAGCTCATTCGGCTTTGGTGCGCATGATACGCGGCCAGTTTGTCTCCATAACTGGTGCTTTTCACGAGGCTATGAATGAGTACAATGCAGCAGAAATGGCTCAGAGAGACAACTGCATGACACGCATCCAAAGGCAAGCGGAGATCGTGGGCAAAGAAGTGACTGAGGATCAAATCGAAGAAATGATTGAGACCGGCAAGTGGAACGTTTTCTCTGACGACTTGCTCACGGACGGGCGAACGGCTCGCTCAGCGCTCACTGAGATCGAGAATCGCCACAAGGAGCTTTTGGAGTTGGAGAGTCGCATACGGGACATCCGCGAGTTGTTTTTCCAACTGGCTTTACTGGTGGAGGAACAAGGGCCCATGGTGGACAACATTGAGGCCAATGTATACGCCACCCAAGACTACGTGGCCAAAGCTACAACTCAGATAAAGAAGGCTGTCAAATACAAGAAGAAAAACCCCTGTCGGcagatcttctgctgctgttttcCGTGTTGCAATAAATAACCTTTGTGCATTTCGCATAGCAGACAAACAGCTGTCTTGCATGCTAGCGTTAACCATGTCATGTGATTTACTCTCAAGACACCAACCAATGCCCGTTGCCTGCGCTTTATGGCTGTCATTGTGAAAAACCACAGGAACTGCGATGCAAATGAGGTGAAGTGATCATGCATTTTCACTGCTGCTCTTCTGTGGGTGTTACAGGACATCTAGATGATGTGTTGGAAGATATTAAAAAGGAAACCACAAGTGTTTTTTACGCCCATGTACAGTACACATGCAAAACATTACAAAGAAACATGTTTTAATGGGGAGTCCACTGCTTTGTTTTAAGGGGCATTTGGGTTTGTgtacatttgtattaatttaataaatatttttatcttt

Function

symbol description
stx11a Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 4. Orthologous to human STX11 (syntaxin 11).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006887 exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0048278 vesicle docking biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0042734 presynaptic membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0048787 presynaptic active zone membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0012505 endomembrane system cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2564 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intracellular protein transport; synaptic vesicle fusion to presynaptic active zone membrane; and vesicle docking. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of SNARE complex. Predicted to be active in presynaptic active zone membrane and synaptic vesicle. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 4. Orthologous to human STX11 (syntaxin 11).

Ensembl:

ensembl_id ENSDARG00000044039

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023507 True 1526 mRNA 0.47 2 7727464 7733037

Neighbor

gene id symbol gene type direction distance location
XLOC_011896 BX511121.1 coding downstream 15525 7643531 ~ 7711939 (-)
XLOC_011895 NA coding downstream 193146 7509058 ~ 7534318 (-)
XLOC_011894 BX296541.1 coding downstream 221486 7504109 ~ 7505978 (-)
XLOC_011893 si:ch211-278p9.3 coding downstream 225548 7489235 ~ 7501916 (-)
XLOC_011891 si:ch211-278p9.1 coding downstream 243110 7440458 ~ 7484354 (-)
XLOC_011898 zbtb2a coding upstream 53209 7786246 ~ 7792376 (-)
XLOC_011899 rmnd1 coding upstream 62522 7795559 ~ 7818991 (-)
XLOC_011900 syne1b coding upstream 111890 7844927 ~ 8173380 (-)
XLOC_011901 NA coding upstream 448684 8181721 ~ 8182704 (-)
XLOC_011902 ahi1 coding upstream 496831 8229868 ~ 8268406 (-)
XLOC_011892 NA non-coding downstream 261112 7464840 ~ 7466352 (-)
XLOC_011884 CU469532.1 non-coding downstream 768734 6958610 ~ 6958730 (-)
XLOC_011904 BX248131.1 non-coding upstream 633668 8366705 ~ 8366816 (-)
XLOC_011906 CU462878.1 non-coding upstream 789869 8522906 ~ 8523030 (-)
XLOC_011910 BX323450.1 non-coding upstream 1027756 8760793 ~ 8799574 (-)
XLOC_011915 CU855685.1 non-coding upstream 1575838 9308875 ~ 9310710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_02626390_02627277 STX11A coding CI01000310 null 2625822 ~ 2628355 (-)