XLOC_011896 (BX511121.1)


Basic Information

Item Value
gene id XLOC_011896
gene name BX511121.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7643531 ~ 7711939 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023505
GATCTCAGCCATGTGCGATTCTCTGCATACCGAACTGCTATGAAGAGCCGCCGCCTACAGAAGGCCCTCTGCCgtgggCCGTCAGGACGTCATTGAGCTCCAGCAGTTTGTGGACTGGATGCATCTGGAGCCGCAGTCTATGGTGTGGTTGCCTGTGCTTCACAGAGTCACCGCTGCAGAAACAGCCAAACATCAGGCCAAATGTAACATCTGTAAAGAGTGTCCCATGGTGGGCTTCAGGTATCGAAGTCTAAAGCACTTCAACTATAATGTGTGTCAGACGTGTTTTTTCTCTGGACGAATCAGCAAAGACCATCATCTCAGTGACCCCATGGTGGAGTACTGCACACCCACGACCTCTGGAGAAGATGTGCGTGACTTCACCAAGGTGCTGAAAAACAAGTTTCGCTCAAagaaatatttcaccaaacaccCGCGGCTGGGTTACCTGCCCGTGCAGACCATCCTGGAGGAAGAGCATTCAGACACCCCAGTTGCGTTTGTGAGCATGTGTCCAGAGGATTATGAGTGA
>TCONS_00024827
TTCTTTACCATGAGAGTCCTAGACAAGCCCAGCAGTCTGAAGATAATGGCTATGGTGAGATCTTCACTGCAGAAAGTCATGCTTTTTCTACAGCACATCCAAAGAATGGCTGTCACCTCACCACGCTATCAGAAACTGTGCAAGGACATTCAGACAGATGTTGACACCCAGACTGATCTTTCGAAAAGGGCTCTGGGGGGTCAGATCCTGAATACCAAAACACAAGAGCTTGATAAGTTTGCCGAAATGAACCACGTAGCTTCGAGAAGATTGACTTGTTTTCACAGGGAGCGTTTGGAGGCCGGTGTGGAAAAATGGACTGGACTCGTAGCCGTCCTTCAAGAGCTTTGGTTTTGGGTAAAGCTGAAAGATGAGGAACTGACACGGCAAAGGCCAATGGGAGAAGGTGTACATACTTTACTGCAGAAACAACGCTACCGGACGGTCAACTCACAGttgaaaaaaCCTTCATACGCTGTCTTGAGGTCCTTAGATAATATAGACATcattagtttaGACAAAAAGATGAAAGAGCCTAATAAACAAGTCAGAGAGAGGAATAACCTTTCATCAGAGATGCTACAGGAAGAGAAGATCCGGCGTCTGGCTGAAGCGGTTCAGGATCAAGTCTGTGAGGTCCAGCAGATCTGGGAACAGTTCAGCGTTCAGACCGTCAGCTTTCAGCAGCAGATCGACTGGGCTCTTGGGAAACTCCGGAACCTCCAGGATGCCATGAACCAGCTGGAGCTCGGGTTGGTGGAGATGGAGAATGAAAACTGGCCCTCTGAGGAACAGGGCATGGTCAACTGCGTGCTGGATAGTGTGGAAAATATGCTGTATGAATTCATCAGCATGCTAGATAAATGTCTGgttatttcattcatttgcaCATTAAACGagcttttttaTAAAATGTCTAACTTAAAAACTTTTCCAATTATGAAAAAGTCTGGAAAACTTTTGGTAATGAATAAAATGTCATCTCAAATAAGTGTGGAGGATACATTACATCATTATACTGCTGACAGGAAAGATTTTAATGCAGCactacattattatatttattATTCTGTTCAGTTCCCATGGCAGAGAGCTGTTTTTCATAACGACGTCCCTTATTATATCAATCATGAGCAGCAGAGCACCTCCTGGGATCATCCAGAGATGACACAACTATTTCAGTCAATGGCTGATCTCAGCCATGTGCGATTCTCTGCATACCGAACTGCTATGAAGAGCCGCCGCCTACAGAAGGCCCTCTGCCTGGACCTTTTGGAGCTCAGCATCGCTCAGAGCGTCTTtgatcaacacaatctcacacatAACGGGCAGCTGCTGGAGATCCCAGGCATCATAAACTGCCTGTGCACCATCTACTGTGAGCTCCAGCAGGTGCACCCAGATCTGGTTAATGTCCCTCTGTGTGTGGATATGTGTCTCAACTGGCTGCTGAAGGTCTATGACAGTGGCAGGAGTGGAAAAGTTCAAGTGCTGTCCATGAAGATTGgcttattttcactttcaaaagGACCCATAAAGGACAAGTACAAATATCTGTTCGCTCAGGTGGCCAGCGCTGCAGGAGTTTGCACCCAGAGGCAGCTGGAGTTACTGCTACACAACAGCATCCAAATCCCACACCAGCTAGGGGAGGCTGCCGCATTCGGAGGGAGCAACATGGAGCCCAGTGTCCGCAGCTGCTTTCAATACcaggtgggCCGTCAGGACGTCATTGAGCTCCAGCAGTTTGTGGACTGGATGCATCTGGAGCCGCAGTCTATGGTGTGGTTGCCTGTGCTTCACAGAGTCACCGCTGCAGAAACAGCCAAACATCAGGCCAAATGTAACATCTGTAAAGAGTGTCCCATGGTGGGCTTCAGGTATCGAAGTCTAAAGCACTTCAACTATAATGTGTGTCAGACGTGTTTTTTCTCTGGACGAATCAGCAAAGACCATCATCTCAGTGACCCCATGGTGGAGTACTGCACACCCACGACCTCTGGAGAAGATGTGCGTGACTTCACCAAGGTGCTGAAAAACAAGTTTCGCTCAAagaaatatttcaccaaacaccCGCGGCTGGGTTACCTGCCCGTGCAGACCATCCTGGAGGAAGAGCATTCAGACACCCCAGTTGCGTTTGTGAGCATGTGTCCAGAGGATTATGAGTGA
>TCONS_00023506
GATCAAGTCTGTGAGGTCCAGCAGATCTGGGAACAGTTCAGCGTTCAGACCGTCAGCTTTCAGCAGCAGATCGACTGGGCTCTTGGGAAACTCCGGAACCTCCAGGATGCCATGAACCAGCTGGAGCTCGGGTTGGTGGAGATGGAGAATGAAAACTGGCCCTCTGAGGAACAGGGCATGGTCAACTGCGTGCTGGATAGTGTGGAAAATATGGGCACTTTGGGTAGTCAGCATCCACAAAGCTCTCAGACGGAGAGGAGACTTTTGTCGCATGACTTCTTGTCAGATTCTGTTCAGTTCCCATGGCAGAGAGCTGTTTTTCATAACGACGTCCCTTATTATATCAAGTGAGTTTTGTTTCATGCACCCCTCATCTCTTCTGTGACACATCTTTCACTTCATGTGA
>TCONS_00024527
AGCTTTTTCACCGTAGCTCAACTTACAATTTCCATGCTTCTGAATCAATCCTCTCTCTTTATCATTCAATATCGCGTTGAAAGTCTTAAGTCTTAAGACGGGACATCTCTTGGGTCTAATTGTTTTGGAAAGGCGTTTGTTCTACTTTACGCTTGCATAAGAAGTTGTTGGACATGCTGTTTGAGTATTTGGATGCACTTTCTAAGCCTAGATGAACTGTGAAAACCTCAGGAGTGGCGATTCTTTACCATGAGAGTCCTAGACAAGCCCAGCAGTCTGAAGATAATGGCTATGGTGAGATCTTCACTGCAGAAAGTCATGCTTTTTCTACAGCACATCCAAAGAATGGCTGTCACCTCACCACGCTATCAGAAACTGTGCAAGGACATTCAGACAGATGTTGACACCCAGACTGATCTTTCGAAAAGGGCTCTGGGGGGTCAGATCCTGAATACCAAAACACAAGAGCTTGATAAGTTTGCCGAAATGAACCACGTAGCTTCGAGAAGGGAGCGTTTGGAGGCCGGTGTGGAAAAATGGACTGGACTCGTAGCCGTCCTTCAAGAGCTTTGGTTTTGGGTAAAGCTGAAAGATGAGGAA
>TCONS_00024828
AAGGAAACAAGCTTTTTCACCGTAGCTCAACTTACAATTTCCATGCTTCTGAATCAATCCTCTCTCTTTATCATTCAATATCGCGTTGAAAGTCTTAAGTCTTAAGACGGGACATCTCTTGGGTCTAATTGTTTTGGAAAGGCGTTTGTTCTACTTTACGCTTGCATAAGAAGTTGTTGGACATGCTGTTTGAGTATTTGGATGCACTTTCTAAGCCTAGATGAACTGTGAAAACCTCAGGAGTGGCGATTCTTTACCATGAGAGTCCTAGACAAGCCCAGCAGTCTGAAGATAATGGCTATGGTGAGATCTTCACTGCAGAAAGTCATGCTTTTTCTACAGCACATCCAAAGAATGGCTGTCACCTCACCACGCTATCAGAAACTGTGCAAGaacacacctaattggccacttccagcttgcTTGTTCCTGATTagcctacagtgttttaaaaagccatgacaCATGACACCACTtccttggcagccatcttgtttttggTCACTTCCTGTTGTTTTATTGAAACGTTTGTATGTGGTATAGTGCAGAGTTTTTTTGGATGTGTTAAGACTTAGattatattgagatttgtgagtactgtttgttttgtgtgacttctgagattatattgagaattgtgagtactgtttgttttagtgtttgctttgtttatgatattttgtttcattggcttgtttgaccttTGCTGCCTGCTGACATTGATTTTGGATTGTCTTTCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000029997 ENSDARG00000117412

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023505 False 532 transcribed_unprocessed_pseudogene 0.52 5 7643531 7672760
TCONS_00024827 False 2172 lncRNA 0.47 23 7643531 7711690
TCONS_00023506 False 406 lncRNA 0.50 3 7676631 7687792
TCONS_00024527 False 600 lncRNA 0.44 3 7700815 7711930
TCONS_00024828 True 741 lncRNA 0.39 2 7710613 7711939

Neighbor

gene id symbol gene type direction distance location
XLOC_011895 NA coding downstream 109213 7509058 ~ 7534318 (-)
XLOC_011894 BX296541.1 coding downstream 137553 7504109 ~ 7505978 (-)
XLOC_011893 si:ch211-278p9.3 coding downstream 141615 7489235 ~ 7501916 (-)
XLOC_011891 si:ch211-278p9.1 coding downstream 159177 7440458 ~ 7484354 (-)
XLOC_011892 NA coding downstream 177179 7464840 ~ 7466352 (-)
XLOC_011897 stx11a coding upstream 15525 7727464 ~ 7733037 (-)
XLOC_011898 zbtb2a coding upstream 74307 7786246 ~ 7792376 (-)
XLOC_011899 rmnd1 coding upstream 83620 7795559 ~ 7818991 (-)
XLOC_011900 syne1b coding upstream 132988 7844927 ~ 8173380 (-)
XLOC_011901 NA coding upstream 469782 8181721 ~ 8182704 (-)
XLOC_011884 CU469532.1 non-coding downstream 684801 6958610 ~ 6958730 (-)
XLOC_011871 NA non-coding downstream 1361891 6224873 ~ 6281640 (-)
XLOC_011904 BX248131.1 non-coding upstream 654766 8366705 ~ 8366816 (-)
XLOC_011906 CU462878.1 non-coding upstream 810967 8522906 ~ 8523030 (-)
XLOC_011910 BX323450.1 non-coding upstream 1048854 8760793 ~ 8799574 (-)
XLOC_011915 CU855685.1 non-coding upstream 1596936 9308875 ~ 9310710 (-)

Expression


Co-expression Network