XLOC_011898 (zbtb2a)


Basic Information

Item Value
gene id XLOC_011898
gene name zbtb2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7786246 ~ 7792376 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023508
gacgTCATCGTGCTGTCTGATTGATTGATCAGCCTCCAGTGATTGACAGGCGTTCGATCAGGCGCGCGCCCGTGTCATGTGATTCAAAGCCTCcggaaagcagcagcagatctggCTGACTGAACTCAGACTGCGCGGTCAAAACATTTCCTCCTTTTTTTGAGCCTTCAAACCAACCTGAACAAAGCGTCTGAATCCTGTCGACAAAAACAACGCGgTGGAAAAAATGGACTTGGCCCATCATGGTCTTGTTCTTCTGAAGCGCCTCAATGCTCAGAGAGAGTTTGGTTTTCTCTGTGATTGTACCGTGGCCATCGGAGATGTTCTTTTCAAAGCCCATAAAGCTGTTCTTGCTGCGTTCTCAAACTACTTCCGCATGCTCTTCATCCATCAGGAAAGtgactGTGTTCGCCTGAAGCCTTCAGACATACAGGCCGACATCTTTAGCTACCTGCTTAATTTAATGTACACTGGAAAATTTACCGCACAACCCATCGACCCCATTCGTCTTGAGCAGGGGGTAAAATTTCTGCATGCCTACCCCTTACTACAGGAGGCAAGTCTTCTTATAAACCCTGAATCCCACTGTACACCTTTGACGAACTCACTTTACGGCATACAGATCCCTGATCAGACGTGCAGCCAGCCTGAAAGAAACTCAACGTGCAAGGATGAGGTTTATGCTAAAAGCTCTGATGTTTTTGGTCGTGAATTTTTGGAAAACTCTGATATGGATTATAGATCTCCACAACCTGTTGGCGTAGAATCACCCACCCAGAACCCTGCAGCCACGATGGTCCAACACCTCACATATGGCATAATGAGCAGAAGTGCTTCTTCCAGAAAGCATTACACATGCAATTATTGTGGAGTTCGATTTAACCAGAGATGCAAGTTAAAGGAACATCTACAGGTCCACACAAACCAAGCAACCGAGCCACAGGTATCAGCCACGCCAAATGGTCACAATATTGATCTTGAATGTCAGGATATGGAGGAAGACCATTTGCATGCTGACAGTGATGTTATTAGTGATACCGATCAACATGCGTGGATGGAAGACACCCCACCATCTTCTGAAATCGCAGATATAGATAACCTGGATGGCACTGAGATGGGTCGTGAAATGAAACGGCGAAAATTTGAGTGTCCGACCTGCGCTCGCAAGTTTATTCAGAAGAGCCACTGGCGGGAGCACATGTACATTCACACAGGAAAACCGTACAAGTGCAGTGCTTGTGGAAAGAACTTCTGCAGAGCGAACCAGGCTGCTCGACATGTTTGTTTGAGCCAGGATGCAGATTCTTATATCATGGTCAATAAGCAAAGCTTGGTTCTGTGTGGCGGAGAAGACAACAGTCAGGTGGAAGCTCTCTTTCAGACTTCAGAAAGACCCTATAAATGCAGCATGTGTGCAACACCATTTGCAAGTCCGTCAGAAGTTCCCAAACATCAGTGTTTGACTGAAAATAAAGCTGCGGCATCAGCAGAATATTCAATGGCGGATCATGAAAATCAGGATTTGGCAGCTCCTCCTGAAGTAACCACTCCATCTTTAAATCTCATCTCTTTCAGTGgcaatatttaactatttatgtgtCATTATCGATTCAGATTCTTGTTTTAAAGGTCACTTCTAATTTTGTTTGCAATTTTGTACCTAAGAGGTATATTGTGAATTTGTTTGAATCTAATAAAATGGCAGTGTTATTTACTGTTTAAAGCAT

Function

symbol description
zbtb2a Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-726 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2).

Ensembl:

ensembl_id ENSDARG00000044038

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023508 True 1727 mRNA 0.45 3 7786246 7792376

Neighbor

gene id symbol gene type direction distance location
XLOC_011897 stx11a coding downstream 53209 7727464 ~ 7733037 (-)
XLOC_011896 BX511121.1 coding downstream 74307 7643531 ~ 7711939 (-)
XLOC_011895 NA coding downstream 251928 7509058 ~ 7534318 (-)
XLOC_011894 BX296541.1 coding downstream 280268 7504109 ~ 7505978 (-)
XLOC_011893 si:ch211-278p9.3 coding downstream 284330 7489235 ~ 7501916 (-)
XLOC_011899 rmnd1 coding upstream 3183 7795559 ~ 7818991 (-)
XLOC_011900 syne1b coding upstream 52551 7844927 ~ 8173380 (-)
XLOC_011901 NA coding upstream 389345 8181721 ~ 8182704 (-)
XLOC_011902 ahi1 coding upstream 437492 8229868 ~ 8268406 (-)
XLOC_011903 lft2 coding upstream 515806 8308182 ~ 8312923 (-)
XLOC_011892 NA non-coding downstream 319894 7464840 ~ 7466352 (-)
XLOC_011884 CU469532.1 non-coding downstream 827516 6958610 ~ 6958730 (-)
XLOC_011904 BX248131.1 non-coding upstream 574329 8366705 ~ 8366816 (-)
XLOC_011906 CU462878.1 non-coding upstream 730530 8522906 ~ 8523030 (-)
XLOC_011910 BX323450.1 non-coding upstream 968417 8760793 ~ 8799574 (-)
XLOC_011915 CU855685.1 non-coding upstream 1516499 9308875 ~ 9310710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_02651152_02652601 ZBTB2, ZBTB2A coding CI01000310 null 2650977 ~ 2652601 (-)