RNA id: TCONS_00023508


Basic Information

Item Value
RNA id TCONS_00023508
length 1727
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_011898
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7786246 ~ 7792376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacgTCATCGTGCTGTCTGATTGATTGATCAGCCTCCAGTGATTGACAGGCGTTCGATCAGGCGCGCGCCCGTGTCATGTGATTCAAAGCCTCcggaaagcagcagcagatctggCTGACTGAACTCAGACTGCGCGGTCAAAACATTTCCTCCTTTTTTTGAGCCTTCAAACCAACCTGAACAAAGCGTCTGAATCCTGTCGACAAAAACAACGCGgTGGAAAAAATGGACTTGGCCCATCATGGTCTTGTTCTTCTGAAGCGCCTCAATGCTCAGAGAGAGTTTGGTTTTCTCTGTGATTGTACCGTGGCCATCGGAGATGTTCTTTTCAAAGCCCATAAAGCTGTTCTTGCTGCGTTCTCAAACTACTTCCGCATGCTCTTCATCCATCAGGAAAGtgactGTGTTCGCCTGAAGCCTTCAGACATACAGGCCGACATCTTTAGCTACCTGCTTAATTTAATGTACACTGGAAAATTTACCGCACAACCCATCGACCCCATTCGTCTTGAGCAGGGGGTAAAATTTCTGCATGCCTACCCCTTACTACAGGAGGCAAGTCTTCTTATAAACCCTGAATCCCACTGTACACCTTTGACGAACTCACTTTACGGCATACAGATCCCTGATCAGACGTGCAGCCAGCCTGAAAGAAACTCAACGTGCAAGGATGAGGTTTATGCTAAAAGCTCTGATGTTTTTGGTCGTGAATTTTTGGAAAACTCTGATATGGATTATAGATCTCCACAACCTGTTGGCGTAGAATCACCCACCCAGAACCCTGCAGCCACGATGGTCCAACACCTCACATATGGCATAATGAGCAGAAGTGCTTCTTCCAGAAAGCATTACACATGCAATTATTGTGGAGTTCGATTTAACCAGAGATGCAAGTTAAAGGAACATCTACAGGTCCACACAAACCAAGCAACCGAGCCACAGGTATCAGCCACGCCAAATGGTCACAATATTGATCTTGAATGTCAGGATATGGAGGAAGACCATTTGCATGCTGACAGTGATGTTATTAGTGATACCGATCAACATGCGTGGATGGAAGACACCCCACCATCTTCTGAAATCGCAGATATAGATAACCTGGATGGCACTGAGATGGGTCGTGAAATGAAACGGCGAAAATTTGAGTGTCCGACCTGCGCTCGCAAGTTTATTCAGAAGAGCCACTGGCGGGAGCACATGTACATTCACACAGGAAAACCGTACAAGTGCAGTGCTTGTGGAAAGAACTTCTGCAGAGCGAACCAGGCTGCTCGACATGTTTGTTTGAGCCAGGATGCAGATTCTTATATCATGGTCAATAAGCAAAGCTTGGTTCTGTGTGGCGGAGAAGACAACAGTCAGGTGGAAGCTCTCTTTCAGACTTCAGAAAGACCCTATAAATGCAGCATGTGTGCAACACCATTTGCAAGTCCGTCAGAAGTTCCCAAACATCAGTGTTTGACTGAAAATAAAGCTGCGGCATCAGCAGAATATTCAATGGCGGATCATGAAAATCAGGATTTGGCAGCTCCTCCTGAAGTAACCACTCCATCTTTAAATCTCATCTCTTTCAGTGgcaatatttaactatttatgtgtCATTATCGATTCAGATTCTTGTTTTAAAGGTCACTTCTAATTTTGTTTGCAATTTTGTACCTAAGAGGTATATTGTGAATTTGTTTGAATCTAATAAAATGGCAGTGTTATTTACTGTTTAAAGCAT

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005654 nucleoplasm cellular_component
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-726 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2).

Ensembl:

ensembl_id ENSDART00000064655

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024828 lncRNA downstream 74307 7710613 ~ 7711939 (-) True XLOC_011896
TCONS_00024527 lncRNA downstream 74316 7700815 ~ 7711930 (-) False XLOC_011896
TCONS_00024827 lncRNA downstream 74556 7643531 ~ 7711690 (-) False XLOC_011896
TCONS_00023506 lncRNA downstream 98454 7676631 ~ 7687792 (-) False XLOC_011896
TCONS_00024826 lncRNA downstream 251928 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00024829 lncRNA upstream 389345 8181721 ~ 8182704 (-) True XLOC_011901
TCONS_00024830 lncRNA upstream 956280 8748656 ~ 8754425 (-) True XLOC_011909
TCONS_00023544 lncRNA upstream 968417 8760793 ~ 8799574 (-) True XLOC_011910
TCONS_00023551 lncRNA upstream 1516499 9308875 ~ 9310637 (-) False XLOC_011915
TCONS_00024831 lncRNA upstream 1516499 9308875 ~ 9310710 (-) True XLOC_011915
TCONS_00023507 mRNA downstream 53209 7727464 ~ 7733037 (-) True XLOC_011897
TCONS_00023503 mRNA downstream 284330 7490247 ~ 7501916 (-) True XLOC_011893
TCONS_00023502 mRNA downstream 289905 7489235 ~ 7496341 (-) False XLOC_011893
TCONS_00023500 mRNA downstream 301892 7471987 ~ 7484354 (-) False XLOC_011891
TCONS_00023501 mRNA downstream 312356 7472004 ~ 7473890 (-) True XLOC_011891
TCONS_00023509 mRNA upstream 3183 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023510 mRNA upstream 12507 7804883 ~ 7818944 (-) False XLOC_011899
TCONS_00023512 mRNA upstream 52551 7844927 ~ 8173380 (-) False XLOC_011900
TCONS_00023513 mRNA upstream 52884 7845260 ~ 7861219 (-) False XLOC_011900
TCONS_00023514 mRNA upstream 53204 7845580 ~ 8169774 (-) True XLOC_011900
TCONS_00023505 other downstream 113486 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023504 other downstream 280268 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023487 other downstream 827516 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 1185335 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023451 other downstream 1772575 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023511 other upstream 19999 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 438055 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 574329 8366705 ~ 8366816 (-) True XLOC_011904
TCONS_00023522 other upstream 730530 8522906 ~ 8523030 (-) True XLOC_011906
TCONS_00023566 other upstream 2274056 10066432 ~ 10073802 (-) True XLOC_011924

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_02651152_02652601.mRNA True 1510 mRNA 0.43 2 CI01000310 2650977 ~ 2652601 (-)