RNA id: TCONS_00023473


Basic Information

Item Value
RNA id TCONS_00023473
length 712
RNA type nonsense_mediated_decay
GC content 0.43
exon number 4
gene id XLOC_011879
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6553795 ~ 6600914 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACAGGTGTTTAATTACTTAAAGCGCAAACAAAAAGAAGCTAACGTTAACGTCTTTTAGTCTGTCAGTCGAACTTTTGACAAAGTTTTTCATGTTATAAAATGACAGAGTTGCATCAGGCAGCTGCGGCTGGAGATTATGATTTGGTGGAAGAAATTGTGAGAAACAATTCGTGTAATCCTAATCAAAAAGACTTGGACTGGAACAAGAAAACCGCTCTGCACTGGGCAGCATCCAAAGGCAGACAGAGATGGTTCGGATACTGGTTGAAAATGGAGCCAGGGCTTGCTTGAGAACGGACAATGGATGGACGCCTGCACACTTCGCAGCTGAATCTGGAAGACTAGCGGTGCTACGACTCCTTCATTCCCTGCATGCACCTGTAGACAAGGAGGACTCCTCTGGAGATAAACCTGTCCGGATTGCTGAAATCTACGGACATGAAGATTGCGTTCGTTTTCTTGAGAAGGCAGAGGTTGAAAGCAGAAACTATCGGCAAATGGCAATTTCAAATGGTCTTCCATTAGATGATACAGATGAAGAATGGGAAGAAGAGAGAAAAGAAGCCAGACTGCAAGAAAGAAACCAGTAGTTAATTAAAAGGGTTTTGCCAGCCAGATGGGTCGTTCAAGAGATTGCTCGCAGAGCTGACGAGTTTCTGcaatgtaaaaatgaaatgtgATTAATAAACTTTGAACACAGGAATGTtataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155643

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024820 lncRNA downstream 309590 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024819 lncRNA downstream 310800 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024821 lncRNA downstream 328148 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024818 lncRNA downstream 617819 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024817 lncRNA downstream 627120 5961811 ~ 5964110 (-) False XLOC_011866
TCONS_00024822 lncRNA upstream 863929 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024526 lncRNA upstream 908147 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00024823 lncRNA upstream 908245 7509156 ~ 7512065 (-) False XLOC_011895
TCONS_00024824 lncRNA upstream 908245 7509156 ~ 7512071 (-) False XLOC_011895
TCONS_00024825 lncRNA upstream 908245 7509156 ~ 7534302 (-) False XLOC_011895
TCONS_00023470 mRNA downstream 54764 6528282 ~ 6536466 (-) False XLOC_011878
TCONS_00023468 mRNA downstream 54925 6528067 ~ 6536305 (-) False XLOC_011878
TCONS_00023469 mRNA downstream 56354 6528238 ~ 6534876 (-) False XLOC_011878
TCONS_00023471 mRNA downstream 56355 6528653 ~ 6534875 (-) True XLOC_011878
TCONS_00023467 mRNA downstream 71807 6512266 ~ 6519423 (-) True XLOC_011877
TCONS_00023476 mRNA upstream 2780 6603691 ~ 6613458 (-) False XLOC_011880
TCONS_00023477 mRNA upstream 2780 6603691 ~ 6618574 (-) False XLOC_011880
TCONS_00023478 mRNA upstream 2780 6603691 ~ 6641548 (-) False XLOC_011880
TCONS_00023479 mRNA upstream 3182 6604093 ~ 6641535 (-) True XLOC_011880
TCONS_00023480 mRNA upstream 114664 6715575 ~ 6738538 (-) False XLOC_011881
TCONS_00023451 other downstream 577559 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 623884 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 628165 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023445 other downstream 859531 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023441 other downstream 1294669 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023487 other upstream 357699 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023504 other upstream 903198 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023505 other upstream 1042620 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 1211464 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 1629520 8230431 ~ 8237652 (-) True XLOC_011902

Expression Profile

//