RNA id: TCONS_00023504


Basic Information

Item Value
RNA id TCONS_00023504
length 1870
RNA type unprocessed_pseudogene
GC content 0.43
exon number 1
gene id XLOC_011894
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7504109 ~ 7505978 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTTACAGAGTGAAGAGAGATGATGTGTTAGTAACTCATCCCTTGACCTGCACTGATTCTGACCGTCAGACCCTCATCAGTCAGAGAGTCAAAGATAAACACAAAACGAGCATGAAAAAGAAATGTGAGAATTTATTTGAGGGAAACAAACTAGAAGAGAAccaaaccctcctgaacagcatctacacacagctctacatcatagagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagagaACAGCCAGAACACAAGACACTCCAATCTACTGCAGTGACATCTTTAAACCCTTACAAGAACCAGAACATGAGGAGAAAGACCaaatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagtttaTTCTAGACTGGAGTGAAGGAAAAGCCagtcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttcaAGATCTGGACTCAGAGATGTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgaaGTTTTCAGACATTGAGAGAGTTAGTGATGTGAATGAGTCTTCATCAGTAGCTGTGTTGATGTCAAACCTCATCAgaggagatctgcttccctctgctcacatctggatcacctccagaccagcagcagccaatcagatcccTTCAAAATACATCAGCCGtctgacagaaattcagggattCAATGAttctcagaaggaggaatatttcaggaagagaatcagtgaTGTGGGTCAAGCCAGaagaatcatctcccacatcagaagatCCAGAAGCCTCCACATCATGTgtcacatacccgtcttctgctggatctcagccactgtgcttcagaagctcctgaaTGAAGATGACAgagcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgactcagatcaacatgaggaaccagaagtatgaagagagagatccagagagaCTTCTGAAGTCCAGCAGAGACATGATTGTGAAACTCGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctatgaagaggacctgattgagagcggcatagaTGTCACTGGCgcctcagtgtattctgggatttGCACTGAGATACtaaaggaggaatctgtgattcatcagaggaaagtctacagcttcctTCATCTGAGCTTTCAGGAGTTCCTCTCtgctttttgtgtgtttaactcGCAATTAGTTGAGAAtgagaaaaacttttttttgcactCTCGACAtcagttgtacagtcattgcAACCCTTTGTATAAGCGTGTAAAATCAGCAGTTGATGAATCCTTACAGAGTGGAAATGGACATCTGGATCTTTTCCTGAGGTTTCTGCTGGGTATCTCACTGAactccaatcagagactcttacAGGATTTATTGACATGCACAGAGAAGAGCTTAGAAACCATCAAGAGAATCACAggatacattaaaaataaaatcaaaggtgATGAACATCTCTCAGCTGGCAGAtgcatcaatctgttcctctgtctgctggaaaTGAAGGATCAGACTCTGTACAGAGAGATTCAGAAGTTTGTGAAATCACAGACTCCCTCAGTGAAGAATCTCTCTCCATCTCACTGCTCAACTATCATCTACATGCTTCAGATATCAGAGGAGGCGCTGAATGATGAGTTTGATCTGAAGAAATACAAAACATCAGATGAGGGCAGAAGGAGACTGATACCAGCTGTGGTGAACTGCAGAAAAGCTCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148082

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024822 lncRNA downstream 37757 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024820 lncRNA downstream 1222469 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024819 lncRNA downstream 1223679 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024821 lncRNA downstream 1241027 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024818 lncRNA downstream 1530698 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024526 lncRNA upstream 3080 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00024823 lncRNA upstream 3178 7509156 ~ 7512065 (-) False XLOC_011895
TCONS_00024824 lncRNA upstream 3178 7509156 ~ 7512071 (-) False XLOC_011895
TCONS_00024825 lncRNA upstream 3178 7509156 ~ 7534302 (-) False XLOC_011895
TCONS_00024826 lncRNA upstream 22253 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00023503 mRNA downstream 2193 7490247 ~ 7501916 (-) True XLOC_011893
TCONS_00023502 mRNA downstream 7768 7489235 ~ 7496341 (-) False XLOC_011893
TCONS_00023500 mRNA downstream 19755 7471987 ~ 7484354 (-) False XLOC_011891
TCONS_00023497 mRNA downstream 27197 7440458 ~ 7476912 (-) False XLOC_011891
TCONS_00023501 mRNA downstream 30219 7472004 ~ 7473890 (-) True XLOC_011891
TCONS_00023507 mRNA upstream 221486 7727464 ~ 7733037 (-) True XLOC_011897
TCONS_00023508 mRNA upstream 280268 7786246 ~ 7792376 (-) True XLOC_011898
TCONS_00023509 mRNA upstream 289581 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023510 mRNA upstream 298905 7804883 ~ 7818944 (-) False XLOC_011899
TCONS_00023512 mRNA upstream 338949 7844927 ~ 8173380 (-) False XLOC_011900
TCONS_00023487 other downstream 545379 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 903198 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023451 other downstream 1490438 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 1536763 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 1541044 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023505 other upstream 137553 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 306397 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 724453 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 860727 8366705 ~ 8366816 (-) True XLOC_011904
TCONS_00023522 other upstream 1016928 8522906 ~ 8523030 (-) True XLOC_011906

Expression Profile

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