RNA id: TCONS_00024526


Basic Information

Item Value
RNA id TCONS_00024526
length 467
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_011895
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7509058 ~ 7534318 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCTCTGTGGTTGAGTGTAAATCTGGAAAGtatagtttgttttattgtatattttaataacgTGGGATCACAAAAGAAAAattctgacattttaagatttaaatttttctttCTTCCTGTTTAGTATTATCTGTGTAATGAATCTCAATGAGAAGAGAGAGCAGggtgttcacacacatacagaaacatCTCCAGAgctcagctgtgtgtctatgaagagtcaTCAATCCATGCCTGTTCCCCTTCAGTTCAGTGATGGACCTGAGACTTCTGAACCCGAAAATTGGCAAAGCGGCTGTGTGTCTGTGAGGAGTATTCAGTCCATGCCTCTTCCCCTTGAGTTCAGTGATGGAGCTGAGCCTTCTGATCCTAAGTGAGTACAGACATAACCATGATAAACGCATTTACCATGAACACATCCGTTACAGTATTCACAACATTTAATCTTTTCTgcattttatgttac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024822 lncRNA downstream 42706 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024820 lncRNA downstream 1227418 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024819 lncRNA downstream 1228628 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024821 lncRNA downstream 1245976 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024818 lncRNA downstream 1535647 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024826 lncRNA upstream 16679 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00024827 lncRNA upstream 131979 7643531 ~ 7711690 (-) False XLOC_011896
TCONS_00023506 lncRNA upstream 165079 7676631 ~ 7687792 (-) False XLOC_011896
TCONS_00024527 lncRNA upstream 189263 7700815 ~ 7711930 (-) False XLOC_011896
TCONS_00024828 lncRNA upstream 199061 7710613 ~ 7711939 (-) True XLOC_011896
TCONS_00023503 mRNA downstream 7142 7490247 ~ 7501916 (-) True XLOC_011893
TCONS_00023502 mRNA downstream 12717 7489235 ~ 7496341 (-) False XLOC_011893
TCONS_00023500 mRNA downstream 24704 7471987 ~ 7484354 (-) False XLOC_011891
TCONS_00023497 mRNA downstream 32146 7440458 ~ 7476912 (-) False XLOC_011891
TCONS_00023501 mRNA downstream 35168 7472004 ~ 7473890 (-) True XLOC_011891
TCONS_00023507 mRNA upstream 215912 7727464 ~ 7733037 (-) True XLOC_011897
TCONS_00023508 mRNA upstream 274694 7786246 ~ 7792376 (-) True XLOC_011898
TCONS_00023509 mRNA upstream 284007 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023510 mRNA upstream 293331 7804883 ~ 7818944 (-) False XLOC_011899
TCONS_00023512 mRNA upstream 333375 7844927 ~ 8173380 (-) False XLOC_011900
TCONS_00023504 other downstream 3080 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023487 other downstream 550328 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 908147 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023451 other downstream 1495387 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 1541712 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023505 other upstream 131979 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 300823 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 718879 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 855153 8366705 ~ 8366816 (-) True XLOC_011904
TCONS_00023522 other upstream 1011354 8522906 ~ 8523030 (-) True XLOC_011906

Expression Profile

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