RNA id: TCONS_00023500


Basic Information

Item Value
RNA id TCONS_00023500
length 2885
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_011891
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7440458 ~ 7484354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGTCCAATACCACCACAAAACAAACATGAAGAAAAGGTGTGAGATAATATTTGAGGGAATCAAATCCGAACAGAAccaaaccctcctgaacagcatctacacacagctctacattatagagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagagaACAGCCAAAATACAAGACACTCCAATCTACTGCAGTGACATCTTCAAACCCTTACAAGAACCAGAACATGAGCAGAAAGaccagatcaagactgttctcactaaaggcatcgctggaattggaaaaaccgtctctgtgcagaagtttaTTCTAGACTGGAGTGAAGGAAAAgccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctggactttcatcctgaacttcaAGATCTGGACTCAGAGATGTATGAGGAGTGTAAAGtcgtgttcatctttgatggtctggatgaaagcagaatcacactgaaGTTTTCAGACATTGAGAGAGTTAGTGATGTGAATAAgtcttcatcagtggctgtgttgatgtcaAACCTCATCAgaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccTTCAAAATACATCAGCCGtctgacagaaattcagggattTAATGAttctcagaaggaggaatatttcaggaagagaatcagcgatGTGGGTCAAGCCAGaagaatcatctcccacatcagaagatCCAGAAGCCTCTACATCATGTgtcacatacccgtcttctgctggatctcagccactgtgcttcagaagctcctgaaTGAAGATGACAgagcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgactcagatcaacatgaggaaccagaagtatgaagagagagatccagagaaactccttAAGTCCAGCAGAGAGGTCATCGTGAAACTTGCTGAACTGGCTTTCAatcagctgatgaagggcaatgtgatgttctatgaagaggacctgattgagagcggcatagacgtcactgaTGCTGCAGTGTATTCTGGGATTTGCACTGAGATCTTTatggaggaatctgtgattcatcagaggaaagtctacagcttcctTCATCTGACCTTTCAGGAGTTTCTCGCTGCTTTCTTTGTGCTTTACTCTTACATAGTCAAAAATGTGGAGtctttaaaattatttctgtaTGAAGAAGATCAGCGTGAAATTAGTTTTTATGATCTATTAAATGCAGCAGTTGATGAATCCTTACAGAGTGCAAATGGACATCTGAACCTTTTCCTGAGGTTCCTGCTTGGTATCTCACTGAactccaatcagagactcttacAGGATCTACTGCCAAACAGAGAGAACAGTTCAGAGATCATTAAGAGAATCACACAATATATTAAAGTCCAAATCAAAGGTGATGAACATCTCTCAGCTGACAGAtgcatcaatctgttcctctgtctgctggaaaTGAAGGATCAGACTCTGTACAGAGAGATTCAGGACTTTGTGAAATCTCAAAATCACTCTGTAAAGAAACTCTCTCCGTCTCACTGCTCCACGATCGCCTACATGCTTCAGATATCAGAGGTGGTGCTAGATGAGTTTGATCTGAAGAAATACAACACATCAGATGAGGGCAGAAGGAGACTGATACCAGCCATGGTGAACTGCAGAAAAGCTCTACTTGCAGGCTGTAATCTTACTGCTCAGTTCTGTAAAGATGTATCTACATTACTACAATCACCAAACTCAATTAGAGAACTGGACCTGAGTCACAAcaacctgcaggattcaggaatACAGCTGCTCTCTGATGGATTGAAGAGCTCACATTGTCAGCTGGAGATACTGAGACTTGCTGGCTGTAATCTCACTGGTCAGTGCTGTGAAAGTTTGTCTTCATCTCTACAATCTTCAAACTCACTGatagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgatggactgaagagctCACGCTGTCAACTGCAGATACTGAGattatctggctgtatggtgacagaggaaggctgttgttttctggcttcagctctgagattaaacccctcacacctgagagagctggatctgagctacaataaCCCAAGACAATCATTAGCTGAGCTGCTTGATAGTCCAAACTACAGACTGGACACACTCAATTTAAATCATGGAGGAAAGAACAGGATTATACAAGGACCACAGAAATATCCGTGTGATCTCACATTGGATGTAAATACAGCACACATTCATCTCGCTCTGTCTGAGAAGAAGAGAAAGGTGACCTATGTGGCGAAGAAGCATTCCTATTCTGATCATCCAGAGAGATTTGATGAGTGTCTTCAGGTTCTGTGTAAAGAGAGTCTgactggacgctgttactgggaggctGAATGGACTGGAGTAGCTGATATATCAGTGGCATATAAAGGAATCTGCAGGAAAGGATGGGGTAATGATTGTTTATTTGGATCTAATGAAAAGTCCTGGAGTCTGACCTGTTTTAATGACAATTTTGCAGTCCGACATAATAACACAAGCACGTTTATATCTGCCCCGTCACTTCTCTCTAATAGAGTAGGAGTGTATCTGGACCAATCTGCTGGCACTCTGTCCTTCTACAGtgtctctgacacacacacactcacacccttACACACATTCAACaccacattcactgcaccactcCATGCTGGATTCGGAGTCTGTTCTTCTGGTAATTCAGTGTCTCTGTGTGACATCAGATAAGTTTTCTGTGTAAAATA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-37 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000144941

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024822 lncRNA downstream 5635 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024820 lncRNA downstream 1190347 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024819 lncRNA downstream 1191557 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024821 lncRNA downstream 1208905 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024818 lncRNA downstream 1498576 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024526 lncRNA upstream 24704 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00024823 lncRNA upstream 24802 7509156 ~ 7512065 (-) False XLOC_011895
TCONS_00024824 lncRNA upstream 24802 7509156 ~ 7512071 (-) False XLOC_011895
TCONS_00024825 lncRNA upstream 24802 7509156 ~ 7534302 (-) False XLOC_011895
TCONS_00024826 lncRNA upstream 43877 7528231 ~ 7534318 (-) True XLOC_011895
TCONS_00023499 mRNA downstream 14257 7450703 ~ 7457730 (-) False XLOC_011891
TCONS_00023498 mRNA downstream 14289 7443479 ~ 7457698 (-) False XLOC_011891
TCONS_00023496 mRNA downstream 31590 7436065 ~ 7440397 (-) True XLOC_011890
TCONS_00023495 mRNA downstream 35221 7380550 ~ 7436766 (-) False XLOC_011890
TCONS_00023494 mRNA downstream 100423 7364911 ~ 7371564 (-) True XLOC_011889
TCONS_00023502 mRNA upstream 4881 7489235 ~ 7496341 (-) False XLOC_011893
TCONS_00023503 mRNA upstream 5893 7490247 ~ 7501916 (-) True XLOC_011893
TCONS_00023507 mRNA upstream 243110 7727464 ~ 7733037 (-) True XLOC_011897
TCONS_00023508 mRNA upstream 301892 7786246 ~ 7792376 (-) True XLOC_011898
TCONS_00023509 mRNA upstream 311205 7795559 ~ 7818991 (-) False XLOC_011899
TCONS_00023487 other downstream 513257 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 871076 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023451 other downstream 1458316 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 1504641 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 1508922 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023504 other upstream 19755 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023505 other upstream 159177 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 328021 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 746077 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 882351 8366705 ~ 8366816 (-) True XLOC_011904

Expression Profile

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