XLOC_011871


Basic Information

Item Value
gene id XLOC_011871
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6224873 ~ 6281640 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024819
AACGAAAGGATGGATGTTTGAGCAGCAGGTACTGATAGTGCGCCGTCATCCGCGGCATCGCCAGACCGGCCACTTTACCGGGGTCCACCCAGGAGAAGTTTGGAGGTTGAGCCGAAGCCATGGGTTTCTCTGTGGTCGTGACACTGGGAAGACGAGGGCCAAATCGGTGTCTCCGCTGGTCGTGCTGTTGGATGGAGAACTTCTCACAGAAGCCGAACCCAAAGTCTCGGTCAGAGCAGATGGTCTGTGTTCTGCTGGAGAGCTGCAGAGCAGACGGAGATTGTTCTGGGTCCACGTTTCTTCATTTGTCTGCTTGGAGAATCATAGAAACACATGGGACTGACCAGCCCTGGAGAGCAGTCTTTCTGGAGTAGATTGGATGTTTGCCCGGCCGCTGACTGCACTGAAGAGGCCTGACCCAGGGCGTGCGGGGCTGAGCATTGGCGGAGGGGTGTACGGTGCGTCGTCAGACATGCTGCTGGCCGTCCTCAGCTGACTGCGGAAGAGCACAGCGCCTCGAGATTCCTGACCGTCGCTGGGTGAAGGAATCATCAGCGGCACCAGACAGTGGCGGCTGATCTGGAGACTGAAGATACGGATTGGCGTTTTGGGAGAGAGAACGAAGATGTTGTTGTTGGTCCTGATAGTGGAAAATCTGCTGCTCCGGGACTTTAAAATCCTGTCTGTGTTCGTAAGATGGAGATTCAAGGCTTTCCCAAGAATCCAGGTGAGTTTTATTAGCAAACATACATCTTTGTTGCTGACCCAGAGCCATTTGATATGCCATCGGATGACTTTGATAACCGTGTGAAGGATGCCAGGAGCTTTTATGGAGATTTCTGTTGACCTGCTCCATGTTGTTGGCTTTCTGTTTCTGTTGGTATCCATAATGAAGCTGCTGGTGGTTTTGGTAAAGGCTATCTGACATGTTAAAGTTGGACTGATCGCACATCAGTTGCTGGTTAAAAACCGGCGACTCTACAGACTGCCTTTCCAATGCGCCTGAATGACTTTGAGTGAAAATTTCAGACATCTTCTCATCCCTACTCATTTCGCCAAAGAAAAGATGGACGTTTTTCGTGGGGAATGCCTTGGAGAATGAATCCAGCCTTTGAGGATTGTCTTTACAAATCATCAAAGGGTTGTTTTGAGATGCCACGTTGAACGGATAAATTCGAGATGTCTCTTGGAGGTCTTCGTGAGATGATGATCCCCATGATGGCGTTCTTCCACACGGATTGTATTCCCAACTACCGGCACTGTCAAGCATTGGAGAAAGCTCATGTCCTGGCGTTCCTGGAGACATTAGATGCTCTTGATTGAGTCGAGGAGACGTTTGGATCGAGCTCATGTTTGGTAAGCCATAATGAGATGCGCTTAATGCACTCGGGCTGTGCTGGAATAAATAGTTCCCGTTGGTGTGGTTCGTGAACTGATTAGTCTCGTACAGGTTTTCAGTCATCTTTAGAGAGGTTAAAGTGACACTAGTGAATTATTTTGAGGGGTCGTGATTACATGGTGGTTTCAGTGTCGCTGTGAAACATCAGATTTCCCCGTTGCTTGGACTCACAGGTTGTTGTTTTCTGAGACTCAGAtggttttactgtaaaatgaggAAGAGAGAAGGTGGTCACATGTTGTACTTAGTTTtataagttaatttatttactgtcaggaactaataatgaacaatatgtggaccatttattaatcatagttcagcattttcTAATGCATTATTACAATACAAATTATTGCTTCTTACactaaaatgacatttgctgtataaactactcatttaaaatgagctgaaacaattctTTAGGTTTTTTTTGGACAACCTAATTTTTTATGCcgaatccactttaatttgtaaaaactaaaaattaacttaattcctttatgttgtctaaacacaaattgattgtgtggaacccagtattttatattgtaattgtcacgatcaccagcgatcataACTCCCTAGATTGCTGGTTTGCAGGCACAATCAAGTATGG
>TCONS_00024820
GACAAAACTCATCCAACAACGAAAGGATGAATGTTTGAGCAGCAGGTACTGATAGTGCGCCGTCATCCGCGGCATCGCCAGACCGGCCACTTTACCGGGGTCCACCCAGGAGAAGTTTGGAGGTTGAGCCGAAGCCATGGGTTTCTCTGTGGTCGTGACACTGGGAAGACGAGGGCCAAATCGGTGTCTCCGCTGGTCGTGCTGTTGGATGGAGAACTTCTCACAGAAGCCGAACCCAAAGTCTCGGTCAGAGCAGATGGTCTGTGTTCTGCTGGAGAGCTGCAGAGCAGACGGAGATTGTTCTGGGTCCACGTTTCTTCATTTGTCTGCTTGGAGAATCATAGAAACACATGGGACTGACCAGCCCTGGAGAGCAGTCTTTCTGGAGTAGATTGGATGTTTGCCCGGCCGCTGACTGCACTGAAGAGGCCTGACCCAGGGCGTGCGGGGCTGAGCATTGGCGGAGGGGTGTACGGTGCGTCGTCAGACATGCTGCTGGCCGTCCTCAGCTGACTGCGGAAGAGCACAGCGCCTCGAGATTCCTGACCGTCGCTGGGTGAAGGAATCATCAGCGGCACCAGACAGTGGCGGCTGATCTGGAGACTGAAGATACGGATTGGCGTTTTGGGAGAGAGAACGAAGATGTTGTTGTTGGTCCTGATAGTGGAAAATCTGCTGCTCCGGGACTTTAAAATCCTGTCTGTGTTCGTAAGATGGAGATTCAAGGCTTTCCCAAGAATCCAGGTGAGTTTTATTAGCAAACATACATCTTTGTTGCTGACCCAGAGCCATTTGATATGCCATCGGATGACTTTGATAACCGTGTGAAGGATGCCAGGAGCTTTTATGGAGATTTCTGTTGACCTGCTCCATGTTGTTGGCTTTCTGTTTCTGTTGGTATCCATAATGAAGCTGCTGGTGGTTTTGGTAAAGGCTATCTGACATGTTAAAGTTGGACTGATCGCACATCAGTTGCTGGTTAAAAACCGGCGACTCTACAGACTGCCTTTCCAATGCGCCTGAATGACTTTGAGTGAAAATTTCAGACATCTTCTCATCCCTACTCATTTCGCCAAAGAAAAGATGGACGTTTTTCGTGGGGAATGCCTTGGAGAATGAATCCAGCCTTTGAGGATTGTCTTTACAAATCATCAAAGGGTTGTTTTGAGATGCCACGTTGAACGGATAAATTCGAGATGTCTCTTGGAGGTCTTCGTGAGATGATGATCCCCATGATGGCGTTCTTCCACACGGATTGTATTCCCAACTACCGGCACTGTCAAGCATTGGAGAAAGCTCATGTCCTGGCGTTCCTGGAGACATTAGATGCTCTTGATTGAGTCGAGGAGACGTTTGGATCGAGCTCATGTTTGGTAAGCCATAATGAGATGCGCTTAATGCACTCGGGCTGTGCTGGAATAAATAGTTCCCGTTGGTGTGGTTCGTGAACTGATTAGTCTCGTACAGGTTTTCAGTCATCTTTAGAGAGGTTAAAGTGACACTAGTGAATTATTTTGAGGGGTCGTGATTACATGGTGGTTTCAGTGTCGCTGTGAAACATCAGATTTCCCCGTTGCTTGGACTCACAGGTTGTTGTTTTCTGAGACTCAGAtggttttactgtaaaatgaggAAGAGAGAAGGTGGTCACATGTTGTACTTAGTTTtataagttaatttatttactgtcaggaactaataatgaacaatatgtggaccatttattaatcatagttcagcattttcTAATGCATTATTACAATACAAATTATTGCTTCTTACactaaaatgacatttgctgtataaactactcatttaaaatgagctgaaacaattctTTAGGTTTTTTTTGGACAACCTAATTTTTTATGCcgaatccactttaatttgtaaaaactaaaaattaacttaattcctttatgttgtctaaacacaaattgattgtgtggaacccagtattttatattgtaattgtcacgatcaccagcgatcataACTCCCTAGATTGCTGGTTTGCAGGCACAATCAAGTATGG
>TCONS_00024821
GGGAAGACGAGGGCCAAATCGGTGTCTCCGCTGGTCGTGCTGTTGGATGGAGAACTTCTCACAGAAGCCGAACCCAAAGTCTCGGTCAGAGCAGATGGTCTGTGTTCTGCTGGAGAGCTGCAGAGCAGACGGAGATTGTTCTGGGTCCACGTTTCTTCATTTGTCTGCTTGGAGAATCATAGAAACACATGGGACTGACCAGCCCTGGAGAGCAGTCTTTCTGGAGTAGATTGGATGTTTGCCCGGCCGCTGACTGCACTGAAGAGGCCTGACCCAGGGCGTGCGGGGCTGAGCATTGGCGGAGGGGTGTACGGTGCGTCGTCAGACATGCTGCTGGCCGTCCTCAGCTGACTGCGGAAGAGCACAGCGCCTCGAGATTCCTGACCGTCGCTGGGTGAAGGAATCATCAGCGGCACCAGACAGTGGCGGTATTTCTTCTTCACTTGCTTTGGTGCAGACTCTCCCTCTGAGTTGGATCTCTTTATCTAGAACGTGTGAGGTTAACATCCGATCAGAAAATAGCAGCTGGAAACTTTTAATCATACAAATCACATTCAGCAGCTGTGGgaagttaaaaacaaataacatttatgcTACAAATACACATTGATTTGCTTTATAAGACATGCGGTAACCTCTGTATGGCTTAGTTGTACATTGTATTTTATACGCTTTCggatgctttaaaataaaagtctcagtcCAACACTGTTATATGCCATGGAAGAGTTAGGATAAAATGTAAAACTcctttaattgtgtttgtttgacgAGTACGGCTTGAGAGAGAGTTAATTatggggtaattttcattttggg

Function

GO:

id name namespace
GO:0001894 tissue homeostasis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024819 False 2018 lncRNA 0.45 5 6224873 6280430
TCONS_00024820 False 2035 lncRNA 0.45 5 6224873 6281640
TCONS_00024821 True 819 lncRNA 0.47 2 6245407 6263082

Neighbor

gene id symbol gene type direction distance location
XLOC_011870 ptk2ba coding downstream 22057 6113680 ~ 6202816 (-)
XLOC_011869 ephx2 coding downstream 148607 6016243 ~ 6076266 (-)
XLOC_011868 CU571076.1 coding downstream 211202 6013555 ~ 6013671 (-)
XLOC_011866 NA coding downstream 251462 5961811 ~ 5973411 (-)
XLOC_011867 NA coding downstream 257527 5967249 ~ 5967346 (-)
XLOC_011873 oct2 coding upstream 50354 6331994 ~ 6349044 (-)
XLOC_011874 txlnbb coding upstream 76520 6358160 ~ 6382392 (-)
XLOC_011875 hivep2b coding upstream 112079 6393719 ~ 6399920 (-)
XLOC_011876 fuca2 coding upstream 156411 6438051 ~ 6451801 (-)
XLOC_011877 dnajc5gb coding upstream 208449 6490089 ~ 6519423 (-)
XLOC_011865 NA non-coding downstream 331859 5889524 ~ 5893014 (-)
XLOC_011864 NA non-coding downstream 339945 5881077 ~ 5884928 (-)
XLOC_011884 CU469532.1 non-coding upstream 676970 6958610 ~ 6958730 (-)
XLOC_011892 NA non-coding upstream 1183200 7464840 ~ 7466352 (-)
XLOC_011894 BX296541.1 non-coding upstream 1222469 7504109 ~ 7505978 (-)
XLOC_011895 NA non-coding upstream 1227418 7509058 ~ 7534318 (-)
XLOC_011896 BX511121.1 non-coding upstream 1361891 7643531 ~ 7711939 (-)

Expression


Co-expression Network