XLOC_011874 (txlnbb)


Basic Information

Item Value
gene id XLOC_011874
gene name txlnbb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6358160 ~ 6382392 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023461
GAAGACAGAGAAGAAAAACCGCTACAGATTCGGTAACTTTACTCCAACACGaaagaTGATTTGGCGGTCAGCATCGGTGTGCTCAGCTGTGATTATTTTGAGGTCTGTCCTCGTCCTGCAGCTGCTGTGTTTGACACTCACTGCTCACTCCTCACTGCTCCTGCTGAATCGCCCCTCAGGATGGAGATGGAGACCTGTGCTCAATCTGCAAACGGAGAAATGACGGAGGATCTGTCTCAGCAGCTACAGGAGATCATCAACACATACCAGCTGAACGAACAGAAGCACGAAACCGAGGAGGACGAgatggaggaggaagaggaggagccgAAGAGCAGAGAGCAGAAGATGGAGAAAAAGATGCTGAAAGGCCTCGGGAAGGAAGCAATGCTGTTGATGCAGAGTCTGAACAAACTGGGGACGCCTGAGAAGAAACTGGACACTCTCATTAAAAAACATGCTGAACTGCTGGAGGAGCACCGCTCAGACCAGAAACAGCTGAAGATGCTGCAGAAGAAGTTTCTCCAGGTGCTTAAGGAGAAAGATCAGCTTCAGGGTGAACACAGCCGAGCCGTTCTGGCCCGCAGCAAACTGGAGAGCCTGTGCCGAGAGCTGCAGAGACACAACAAGACCCTGAAGGAGGAGACTCTGCAGCGGTGTCGTGAAGACGATCTGAAGAGGAAGGAAATCACCACACATTTCCAGAGCACACTGAGCGACATCCAGTCCCAGATCGAGGAGCACAGCAGCCGAAACAACAAACTCTGTCAGGAGAACAGCGAGCTGGCTGAGAAACTCAAAGACCTCATTTCCAAATATGACCAGCGGGAGGCGAATCTTGAGAAAGTGTTCAAGCACAGAGACCTGCAGCAGAAATTACTGGAGACGAAACTGGCACAGGTCAACATGATCCTCAAAGAGTCTGAGGAGAAACACAAGCTGGAGAAAGAACATTTACTGAAGCAAGCCGCGGAGGCCAAACTGCACGTTAAACTTCTGAAAGAGCAAGAGGTTGACATGAAGGCTCAGCTTGCTGTATATTCCGAGAAGTTTGATGAACTACAAGGATCGGTGTCTAAGAGTAATGGTGTTTATGCCAGCTTCAAACAGGACATGGACAAGatgggGAAGAAGATGAAAAAGTTGGAGAAAGAGGCATCGGCCTGGAAATCCCGCTTTGATGGCTGTAATAAAGCCCTGGTTGATATGGTTGCTGATATGTTCCTATGCAGAAAACCCTGAAGGAGAAGGAGTTTGAACTCTTCACCCTGAAGACCCAGAAGCTGGAGAATCTCTGCCGAGCTCTTCAGGACGAAAGAAAAACCCTGATTCAGAAGCTCCAACAACCTGACACCGAAAACACAGCCTCTCCTCCATCCATAAATACTGAGAAACCTACAGAGAAAGCAGCAGAAACTAAAGAGGAAGCCGCAGAAACTAAAGATCAAGCAGCGTCCATAACAGAAGCGGTCAGTAAAGAAGCAAACCCATCATCTGAACAAGTCAGCGATCCTCCATCAGAAACAACACTGTTAAACAAAGAGCTGAAGAGCCTGAAGGATGAGAAAGCTCGTCTGCTGGAGCTAGCAGAAGTTTTTAGCATCCGACGCCATCTTCCGCCGCAAGCTTATGAAGACCCAAGTAGCTGTTTGGAAGAGGAAAAACAGGTGGATATGGAGGAGACGGGATCTCTCACAGATACACTGTCTGAGGAACACCAGGAGCTCAGAGACAAAGACATGCTGTCGGTGGATTAGACAGACTTGCAGTGTGAGAacagacagaaataaaaacatttatacaacTTAA
>TCONS_00023460
GAAGACAGAGAAGAAAAACCGCTACAGATTCGGTAACTTTACTCCAACACGaaagaTGATTTGGCGGTCAGCATCGGTGTGCTCAGCTGTGATTATTTTGAGGTCTGTCCTCGTCCTGCAGCTGCTGTGTTTGACACTCACTGCTCACTCCTCACTGCTCCTGCTGCAGAATCGCCCCTCAGGATGGAGATGGAGACCTGTGCTCAATCTGCAAACGGAGAAATGACGGAGGATCTGTCTCAGCAGCTACAGGAGATCATCAACACATACCAGCTGAACGAACAGAAGCACGAAACCGAGGAGGACGAgatggaggaggaagaggaggagccgAAGAGCAGAGAGCAGAAGATGGAGAAAAAGATGCTGAAAGGCCTCGGGAAGGAAGCAATGCTGTTGATGCAGAGTCTGAACAAACTGGGGACGCCTGAGAAGAAACTGGACACTCTCATTAAAAAACATGCTGAACTGCTGGAGGAGCACCGCTCAGACCAGAAACAGCTGAAGATGCTGCAGAAGAAGTTTCTCCAGGTGCTTAAGGAGAAAGATCAGCTTCAGGGTGAACACAGCCGAGCCGTTCTGGCCCGCAGCAAACTGGAGAGCCTGTGCCGAGAGCTGCAGAGACACAACAAGACCCTGAAGGAGGAGACTCTGCAGCGGTGTCGTGAAGACGATCTGAAGAGGAAGGAAATCACCACACATTTCCAGAGCACACTGAGCGACATCCAGTCCCAGATCGAGGAGCACAGCAGCCGAAACAACAAACTCTGTCAGGAGAACAGCGAGCTGGCTGAGAAACTCAAAGACCTCATTTCCAAATATGACCAGCGGGAGGCGAATCTTGAGAAAGTGTTCAAGCACAGAGACCTGCAGCAGAAATTACTGGAGACGAAACTGGCACAGGTCAACATGATCCTCAAAGAGTCTGAGGAGAAACACAAGCTGGAGAAAGAACATTTACTGAAGCAAGCCGCGGAGGCCAAACTGCACGTTAAACTTCTGAAAGAGCAAGAGGTTGACATGAAGGCTCAGCTTGCTGTATATTCCGAGAAGTTTGATGAACTACAAGGATCGGTGTCTAAGAGTAATGGTGTTTATGCCAGCTTCAAACAGGACATGGACAAGatgggGAAGAAGATGAAAAAGTTGGAGAAAGAGGCATCGGCCTGGAAATCCCGCTTTGATGGCTGTAATAAAGCCCTGGTTGATATGGTTGCTGATAAAACCCTGAAGGAGAAGGAGTTTGAACTCTTCACCCTGAAGACCCAGAAGCTGGAGAATCTCTGCCGAGCTCTTCAGGACGAAAGAAAAACCCTGATTCAGAAGCTCCAACAACCTGACACCGAAAACACAGCCTCTCCTCCATCCATAAATACTGAGAAACCTACAGAGAAAGCAGCAGAAACTAAAGAGGAAGCCGCAGAAACTAAAGATCAAGCAGCGTCCATAACAGAAGCGGTCAGTAAAGAAGCAAACCCATCATCTGAACAAGTCAGCGATCCTCCATCAGAAACAACACTGTTAAACAAAGAGCTGAAGAGCCTGAAGGATGAGAAAGCTCGTCTGCTGGAGCTAGCAGAAGTTTTTAGCATCCGACGCCATCTTCCGCCGCAAGCTTATGAAGACCCAAGTAGCTGTTTGGAAGAGGAAAAACAGGTGGATATGGAGGAGACGGGATCTCTCACAGATACACTGTCTGAGGAACACCAGGAGCTCAGAGACAAAGACATGCTGTCGGTGGATTAGACAGACTTGCAGTGTGAGAacagacagaaataaaaacatttatacaacTTAA
>TCONS_00023459
GAAGACAGAGAAGAAAAACCGCTACAGATTCGGTAACTTTACTCCAACACGgaaagaTGATTTGGCGGTCAGCATCGGTGTGCTCAGCTGTGATTATTTTGAGGTCTGTCCTCGTCCTGCAGCTGCTGTGTTTGACACTCACTGCTCACTCCTCACTGCTCCTGCTGAATCGCCCCTCAGGATGGAGATGGAGACCTGTGCTCAATCTGCAAACGGAGAAATGACGGAGGATCTGTCTCAGCAGCTACAGGAGATCATCAACACATACCAGCTGAACGAACAGAAGCACGAAACCGAGGAGGACGAgatggaggaggaagaggaggagccgAAGAGCAGAGAGCAGAAGATGGAGAAAAAGATGCTGAAAGGCCTCGGGAAGGAAGCAATGCTGTTGATGCAGAGTCTGAACAAACTGGGGACGCCTGAGAAGAAACTGGACACTCTCATTAAAAAACATGCTGAACTGCTGGAGGAGCACCGCTCAGACCAGAAACAGCTGAAGATGCTGCAGAAGAAGTTTCTCCAGGTGCTTAAGGAGAAAGATCAGCTTCAGGGTGAACACAGCCGAGCCGTTCTGGCCCGCAGCAAACTGGAGAGCCTGTGCCGAGAGCTGCAGAGACACAACAAGACCCTGAAGGAGGAGACTCTGCAGCGGTGTCGTGAAGACGATCTGAAGAGGAAGGAAATCACCACACATTTCCAGAGCACACTGAGCGACATCCAGTCCCAGATCGAGGAGCACAGCAGCCGAAACAACAAACTCTGTCAGGAGAACAGCGAGCTGGCTGAGAAACTCAAAGACCTCATTTCCAAATATGACCAGCGGGAGGCGAATCTTGAGAAAGTGTTCAAGCACAGAGACCTGCAGCAGAAATTACTGGAGACGAAACTGGCACAGGTCAACATGATCCTCAAAGAGTCTGAGGAGAAACACAAGCTGGAGAAAGAACATTTACTGAAGCAAGCCGCGGAGGCCAAACTGCACGTTAAACTTCTGAAAGAGCAAGAGGTTGACATGAAGGCTCAGCTTGCTGTATATTCCGAGAAGTTTGATGAACTACAAGGATCGGTGTCTAAGAGTAATGGTGTTTATGCCAGCTTCAAACAGGACATGGACAAGatgggGAAGAAGATGAAAAAGTTGGAGAAAGAGGCATCGGCCTGGAAATCCCGCTTTGATGGCTGTAATAAAGCCCTGGTTGATATGGTTGCTGATATGTTCCTATGCAGAAAACCCTGAAGGAGAAGGAGTTTGAACTCTTCACCCTGAAGACCCAGAAGCTGGAGAATCTCTGCCGAGCTCTTCAGGACGAAAGAAAAACCCTGATTCAGAAGCTCCAACAACCTGACACCGAAAACACAGCCTCTCCTCCATCCATAAATACTGAGAAACCTACAGAGAAAGCAGCAGAAACTAAAGAGGAAGCCGCAGAAACTAAAGATCAAGCAGCGTCCATAACAGAAGCGGTCAGTAAAGAAGCAAACCCATCATCTGAACAAGTCAGCGATCCTCCATCAGAAACAACACTGTTAAACAAAGAGCTGAAGAGCCTGAAGGATGAGAAAGCTCGTCTGCTGGAGCTAGCAGAAGTTTTTAGCATCCGACGCCATCTTCCGCCGCAAGCTTATGAAGACCCAAGTAGCTGTTTGGAAGAGGAAAAACAGGTGGATATGGAGGAGACGGGATCTCTCACAGATACACTGTCTGAGGAACACCAGGAGCTCAGAGACAAAGACATGCTGTCGGTGGATTAGACAGACTTGCAGTGTGAGAacagacagaaataaaaacatttatacaacTTAA

Function

symbol description
txlnbb Predicted to enable syntaxin binding activity. Is expressed in somite. Orthologous to human TXLNB (taxilin beta).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-77 Predicted to enable syntaxin binding activity. Is expressed in somite. Orthologous to human TXLNB (taxilin beta).

Ensembl:

ensembl_id ENSDARG00000076241

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023461 False 1809 mRNA 0.48 11 6358160 6382392
TCONS_00023460 False 1798 mRNA 0.48 11 6358160 6382392
TCONS_00023459 True 1810 mRNA 0.48 11 6358160 6382392

Neighbor

gene id symbol gene type direction distance location
XLOC_011873 oct2 coding downstream 9116 6331994 ~ 6349044 (-)
XLOC_011872 BX000363.2 coding downstream 62049 6275206 ~ 6296111 (-)
XLOC_011871 NA coding downstream 76520 6224873 ~ 6281640 (-)
XLOC_011870 ptk2ba coding downstream 155344 6113680 ~ 6202816 (-)
XLOC_011869 ephx2 coding downstream 281894 6016243 ~ 6076266 (-)
XLOC_011875 hivep2b coding upstream 11327 6393719 ~ 6399920 (-)
XLOC_011876 fuca2 coding upstream 55659 6438051 ~ 6451801 (-)
XLOC_011877 dnajc5gb coding upstream 107697 6490089 ~ 6519423 (-)
XLOC_011878 cenpo coding upstream 145675 6528067 ~ 6536466 (-)
XLOC_011879 ANKRD66 coding upstream 171403 6553795 ~ 6600914 (-)
XLOC_011868 CU571076.1 non-coding downstream 344489 6013555 ~ 6013671 (-)
XLOC_011866 NA non-coding downstream 384749 5961811 ~ 5973411 (-)
XLOC_011867 NA non-coding downstream 390814 5967249 ~ 5967346 (-)
XLOC_011865 NA non-coding downstream 465146 5889524 ~ 5893014 (-)
XLOC_011884 CU469532.1 non-coding upstream 576218 6958610 ~ 6958730 (-)
XLOC_011892 NA non-coding upstream 1082448 7464840 ~ 7466352 (-)
XLOC_011894 BX296541.1 non-coding upstream 1121717 7504109 ~ 7505978 (-)
XLOC_011895 NA non-coding upstream 1126666 7509058 ~ 7534318 (-)
XLOC_011896 BX511121.1 non-coding upstream 1261139 7643531 ~ 7711939 (-)

Expression


Co-expression Network