XLOC_011870 (ptk2ba)


Basic Information

Item Value
gene id XLOC_011870
gene name ptk2ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6113680 ~ 6202816 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023454
ATGACGACGTATGTGGAGATGTCTGGAGATTTGAGGAGCAGCAGCAGGAGCACAGTGAAGATCATCAAGGTGTGTTTTATCAGCAACAGCGCAAACCTCGGCAAGAACTTCAAACTGGTCAAATGTGAAAGTTCCTGGAACATCAGGAGCATTATCAAGGCGATCTTGGACAGCGGGCGTCTCGGGCCAAACATCAAGTGTTTTGAATGCTATGGTTTAATGCTGAAGCACCTGAAATCAGACGAGGTCCATTGGCTGCATCCCAAACTCACCGTAGCAGAGGTggagcagaaatatgaacagcaGCACGTCGAGGCCGAGTGGAGATATGATTTGAGGATTCGTTACATACCTTCTGATTTTCTGGAGAAGCTAAAAGACGACAAAACCACAATGCTGTACTTCTACCAGCAGGTTCGTGCCGATTACATGCAGCACAACGCCAGAAGAGTCAGCGACGGGATGGCCCTGCAGCTCGGCTGTCTGGAGATCAGGAGGTTTTATAAAGACATGAATGCGAGTGGCCTGGAGAAGAAATCCAACTTCGAGCTGTTGGAGAAAGATGTGGGTCTGGATTTGTTCTTTCCTCCAGAATTAATCGACAGTATGAAGCCGAAGCATCTGAGGAAAATGATCCAGCAGACGTTTCTGCAGTTCGCTATGCTGAAGGAGGAGCAGTGCATCATCAAGTTCTTCGAGACGTTATCTGTCTTTTCCAGTTTTGATGAAGAGGTTTTTCCTTGTGAGCTGGTGCAAGGATGGAGCGTCTCTGTCGATCTTGTCATTGGACCCAAAGGTATCCGTCAACGCACTGATAAAATCTCTGTGCCGGTATCTCTTGCCACATTTTCACAAATTCGAAGTATTAAATGCACACATCAGAACGATGGAAAGGCACTGTTACATATCAATATAGAAGGAGCTAAACAGCCTTTGTCCATCAGCACAGCGTCTCTGGCCCTCGCTGAGAACATGGCAGACTTAATAGATGGCTACTGTCGTCTGGAGCAAGGAAACGAGAAGACTTTAATAGTTTGGCCCAATAAAGATTCAGATATTTATGCAGAGATACCCGAAGAAAAACCACTTGCAGCTTGTAAATTCAGCATCTCACGAAATGACATTGTGCTCGGCCGGATTCTGGGTGAAGGTTTTTTcggtgaggtgcatgatgggatctaTAAAAGCAAGTCGGGCGAGCGAGTGAACGTAGCTGTGAAAACCTGCAAGGACTGTTCAGCTGATGTGAAGGAAAAGTTCATGAGTGAAGCTTTGATTATGAAGAAACTGGACCATCCACACATCGTGAGGCTCATAGGAATCATTGAAGAAGATCCTGTGTGGATCGTGATGGAGCTTTACCCATTTGGAGAGCTGGAAAATTATCTGAAGGATAACCAGAACAAACTAACCAACGTCACCCTGATCCTGTACAGCCTGCAGATCAGCAAAGCTCTGGCTTACCTCGAGGGAGTTAACATGGTACACAGAGATATAGCTGTGAGAAACGTGCTGGTGGCCAAAGTGGACTGTGTGAAGCTGGGAGACTTCGGCTTGTCCAGATACATCGAGGAAGAGGAATATTATAAAGCCTCTGTGACTCGATTACCAATCAAATGGATGGCTCCGGAGTCCATCAACTTCAGACGCTTCACCTCGGCCAGTGATGTCTGGATGTTTGCTGTGTGTATGTGGGAGATCATGAGCGGAGGTCAGCAGCCGTTCTTCTGGCTGGAGAATAAAGATGTGATCAACCAATTGGAGCAGGGCATGCGTCTGCCCAAACCTGAGCGCTGCCCGCCGACGCTCTACTCTCTGATGACCCGCTGCTGGAGCTACAGCCCGAGAGACAGACCCAGCTTCACTGAGCTTGTCTGTAAACTCAGTGATGTTCATAAACTGGAGCAGGAAGTGGAGGTGGAGGAGCTGAGAGCCAGATCTCGCACCATAAACATATCTGCATTTCCCGACGCTCCACCAAAGCCATCAAGAATGATACCGCCAGGCTTCAACACTCTGAGTCCACGGCTCAATGTCCAGGTGAGCTTTATCTCTATTCTGTCTgctcgGGGTGTTCAGGAGCCCAGCAGTAAGGCGGATGCGCAGAGACTGTGGGATGTGGAGCGTCAGCAGGTGCAGGAGACGCTACGCAGACAGAAGCAGGAGATGCTGGAGGACCATCAGTGGCTGGAGAAAGAGGAGAAACTGCTGGTCAtctcCTCTCAAGGTCCTCCAGAGAAGCCACCGCGTGTTTCAGCTCAGccAGCACCGACAGCAGAGCTGGACCGCACAGATGATCTGGTCTACCAGAACGTGATGGAGATGGTGAAGGTGGTGGTGCAGCTGAAGAACCAGGTCAACACCCTTCCAGCATCAGAGTATGTGAGTGTGGTGAAGTCTGTAGGAATGACGCTGCGCAGTCTGATCCACAGTGTAGACGACATCCTGCCCTCGCTACACGAATCTATCAGGACAGAgatTGAAGGCACACAGAAGCTGCTGAATAAGGATCTGGCGGAgctgatcagtaagatgcgtctGGCTCAGCAGAACTCCGTCACGTCTCTGAAAGACGAGTGTAAGAAGCAGATGCTGGCGGCCGCTCACACACTCGCCATGGACTCCAAAAACCTGCTGGACGCCGTCGACCAAGCCAGAagaaatcaattattagaaattagtttttaa
>TCONS_00023455
GTCCACAACACTCGCGTCAGGACTACATCTCACTGCTCTCAGTCTCTCAGTGTTCAAGATGAATTAAAGAAACACTGGACAACAATCACACTCACAGAGCCGGACTGAACATCAGCTCACACTTCAGGGCTGACTGAGTGGATCTGCGGATGACGACGTATGTGGAGATGTCTGGAGATTTGAGGAGCAGCAGCAGGAGCACAGTGAAGATCATCAAGGTGTGTTTTATCAGCAACAGCGCAAACCTCGGCAAGAACTTCAAACTGGTCAAATGTGAAAGTTCCTGGAACATCAGGAGCATTATCAAGGCGATCTTGGACAGCGGGCGTCTCGGGCCAAACATCAAGTGTTTTGAATGCTATGGTTTAATGCTGAAGCACCTGAAATCAGACGAGGTCCATTGGCTGCATCCCAAACTCACCGTAGCAGAGGTggagcagaaatatgaacagcaGCACGTCGAGGCCGAGTGGAGATATGATTTGAGGATTCGTTACATACCTTCTGATTTTCTGGAGAAGCTAAAAGACGACAAAACCACAATGCTGTACTTCTACCAGCAGGTTCGTGCCGATTACATGCAGCACAACGCCAGAAGAGTCAGCGACGGGATGGCCCTGCAGCTCGGCTGTCTGGAGATCAGGAGGTTTTATAAAGACATGAATGCGAGTGGCCTGGAGAAGAAATCCAACTTCGAGCTGTTGGAGAAAGATGTGGGTCTGGATTTGTTCTTTCCTCCAGAATTAATCGACAGTATGAAGCCGAAGCATCTGAGGAAAATGATCCAGCAGACGTTTCTGCAGTTCGCTATGCTGAAGGAGGAGCAGTGCATCATCAAGTTCTTCGAGACGTTATCTGTCTTTTCCAGTTTTGATGAAGAGGTTTTTCCTTGTGAGCTGGTGCAAGGATGGAGCGTCTCTGTCGATCTTGTCATTGGACCCAAAGGTATCCGTCAACGCACTGATAAAATCTCTGTGCCGGTATCTCTTGCCACATTTTCACAAATTCGAAGTATTAAATGCACACATCAGAACGATGGAAAGGCACTGTTACATATCAATATAGAAGGAGCTAAACAGCCTTTGTCCATCAGCACAGCGTCTCTGGCCCTCGCTGAGAACATGGCAGACTTAATAGATGGCTACTGTCGTCTGGAGCAAGGAAACGAGAAGACTTTAATAGTTTGGCCCAATAAAGACAGAGAATCCAGAAACTCTCTACCTCCATTACCCGGCAGCAAGGAGAATACCACATCTCACAAGGAAGGCAAAAATTCAGATATTTATGCAGAGATACCCGAAGAAAAACCACTTGCAGCTTGTAAATTCAGCATCTCACGAAATGACATTGTGCTCGGCCGGATTCTGGGTGAAGGTTTTTTcggtgaggtgcatgatgggatctaTAAAAGCAAGTCGGGCGAGCGAGTGAACGTAGCTGTGAAAACCTGCAAGGACTGTTCAGCTGATGTGAAGGAAAAGTTCATGAGTGAAGCTTTGATTATGAAGAAACTGGACCATCCACACATCGTGAGGCTCATAGGAATCATTGAAGAAGATCCTGTGTGGATCGTGATGGAGCTTTACCCATTTGGAGAGCTGGAAAATTATCTGAAGGATAACCAGAACAAACTAACCAACGTCACCCTGATCCTGTACAGCCTGCAGATCAGCAAAGCTCTGGCTTACCTCGAGGGAGTTAACATGGTACACAGAGATATAGCTGTGAGAAACGTGCTGGTGGCCAAAGTGGACTGTGTGAAGCTGGGAGACTTCGGCTTGTCCAGATACATCGAGGAAGAGGAATATTATAAAGCCTCTGTGACTCGATTACCAATCAAATGGATGGCTCCGGAGTCCATCAACTTCAGACGCTTCACCTCGGCCAGTGATGTCTGGATGTTTGCTGTGTGTATGTGGGAGATCATGAGCGGAGGTCAGCAGCCGTTCTTCTGGCTGGAGAATAAAGATGTGATCAACCAATTGGAGCAGGGCATGCGTCTGCCCAAACCTGAGCGCTGCCCGCCGACGCTCTACTCTCTGATGACCCGCTGCTGGAGCTACAGCCCGAGAGACAGACCCAGCTTCACTGAGCTTGTCTGTAAACTCAGTGATGTTCATAAACTGGAGCAGGAAGTGGAGGTGGAGGAGCTGAGAGCCAGATCTCGCACCATAAACATATCTGCATTTCCCGACGCTCCACCAAAGCCATCAAGAATGATACCGCCAGGCTTCAACACTCTGAGTCCACGGCTCAATGTCCAGgctcgGGGTGTTCAGGAGCCCAGCAGTAAGGCGGATGCGCAGAGACTGTGGGATGTGGAGCGTCAGCAGGTGCAGGAGACGCTACGCAGACAGAAGCAGGAGATGCTGGAGGACCATCAGTGGCTGGAGAAAGAGGAGAAACTGCTGGTTCCGTTTGCTAATGAAGACATGAAAACGAAAGCGacCACAGAAAATGACACTGGCCaagtctcCTCTCAAGGTCCTCCAGAGAAGCCACCGCGTGTTTCAGCTCAGccAGCACCGACAGCAGAGCTGGACCGCACAGATGATCTGGTCTACCAGAACGTGATGGAGATGGTGAAGGTGGTGGTGCAGCTGAAGAACCAGGTCAACACCCTTCCAGCATCAGAGTATGTGAGTGTGGTGAAGTCTGTAGGAATGACGCTGCGCAGTCTGATCCACAGTGTAGACGACATCCTGCCCTCGCTACACGAATCTATCAGGACAGAgatTGAAGGCACACAGAAGCTGCTGAATAAGGATCTGGCGGAgctgatcagtaagatgcgtctGGCTCAGCAGAACTCCGTCACGTCTCTGAAAGACGAGTGTAAGAAGCAGATGCTGGCGGCCGCTCACACACTCGCCATGGACTCCAAAAACCTGCTGGACGCCGTCGACCAAGCCAGAGTCAGAGCCAACACGGCCAGACCCGCCTCCTCGTGAATCTCAAGCTCTGATTGGAGGACAAACAGGTGGTTTCGTCCAATCAGATCAGTTGCTGGCTTTATTTATGTTCCTGAATGTTAAGAAAGCAGTGCTTTCAAATgtgaatttaatttttatatatgctTGATTTTAATCATGTTATTAGTATTAGGAAATAAAGGCGTAAGTTTTCAAAATATTAACCTATTCAATTCTCTAGACTTTACaagataaagtcaaaattattcgccttcctgtgaattttttc
>TCONS_00023456
ATGACGACGTATGTGGAGATGTCTGGAGATTTGAGGAGCAGCAGCAGGAGCACAGTGAAGATCATCAAGGTGTGTTTTATCAGCAACAGCGCAAACCTCGGCAAGAACTTCAAACTGGTCAAATGTGAAAacatacagagaatcgaaattGCGATCTTGGACAGCGGGCGTCTCGGGCCAAACATCAAGTGTTTTGAATGCTATGGTTTAATGCTGAAGCACCTGAAATCAGACGAGGTCCATTGGCTGCATCCCAAACTCACCGTAGCAGAGGTggagcagaaatatgaacagcaTCACTCCGTTTGCTCTGAAGCATCGTGGACTTGTGATATACTGTTGCTGATGAATGAAGGTGTGATTGTTGTGGTTTTGCAGGTTCGTGCCGATTACATGCAGCACAACGCCAGAAGAGTCAGCGACGGGATGGCCCTGCAGCTCGGCTGTCTGGAGATCAGGAGGTTTTATAAAGACATGAATGCGAGTGGCCTGGAGAAGAAATCCAACTTCGAGCTGTTGGAGAAAGATGTGGGTCTGGATTTGTTCTTTCCTCCAGAATTAATCGACAGTATGAAGCCGAAGCATCTGAGGAAAATGATCCAGCAGACGTTTCTGCAGTTCGCTATGCTGAAGGAGGAGCAGTGCATCATCAAGTTCTTCGAGACGTTATCTGTCTTTTCCAGTTTTGATGAAGAGGTTTTTCCTTGTGAGCTGGTGCAAGGATGGAGCGTCTCTGTCGATCTTGTCATTGGACCCAAAGGTATCCGTCAACGCACTGATAAAATCTCTGTGGTAAGAAAAACATACCACCAGACACCTTTGTCCATCAGCACAGCGTCTCTGGCCCTCGCTGAGAACATGGCAGACTTAATAGATGGCTACTGTCGTCTGGAGCAAGGAAACGAGAAGACTTTAATAGTTTGGCCCAATAAAGGTGTAGAGATGTGCACTGAAAGAACAGTCATCTCACGAAATGACATTGTGCTCGGCCGGATTCTGGGTGAAGGTTTTTTcggtgaggtgcatgatgggatctaTAAAAGCAAGTCGGGCGAGCGAGTGAACGTAGCTGTGAAAACCTGCAAGGACTGTTCAGCTGATGTGAAGGAAAAGTTCATGAGTGAAGCTTTGATTATGAAGAAACTGGACCATCCACACATCGTGAGGCTCATAGGAATCATTGAAGAAGATCCTGTGTGGATCGTGATGGAGCTTTACCCATTTGGAGAGCTGGAAAATTATCTGAAGGATAACCAGAACAAACTAACCAACGTCACCCTGATCCTGTACAGCCTGCAGATCAGCAAAGCTCTGGCTTACCTCGAGGGAGTTAACATGGTACACAGAGATATAGCTGTGAGAAACGTGCTGGTGGCCAAAGTGGACTGTGTGAAGCTGGGAGACTTCGGCTTGTCCAGATACATCGAGGAAGAGGAATATTATAAAGCCTCTGTGACTCGATTACCAATCAAATGGATGGCTCCGGAGTCCATCAACTTCAGACGCTTCACCTCGGCCAGTGATGTCTGGATGTTTGCTGTGTGTATGTGGGAGATCATGAGCGGAGGTCAGCAGCCGTTCTTCTGGCTGGAGAATAAAGATGTGATCAACCAATTGGAGCAGGGCATGCGTCTGCCCAAACCTGAGCGCTGCCCGCCGACGCTCTACTCTCTGATGACCCGCTGCTGGAGCTACAGCCCGAGAGACAGACCCAGCTTCACTGAGCTTGTCTGTAAACTCAGTGATGTTCATAAACTGGAGCAGGAAGTGGAGGTGGAGGAGCTGAGAGCCAGATCTCGCACCATAAACATATCTGCATTTCCCGACGCTCCACCAAAGCCATCAAGAATGATACCGCCAGGCTTCAACACTCTGAGTCCACGGCTCAATGTCCAGGAGCCCAGCAGTAAGGCGGATGCGCAGAGACTGTGGGATGTGGAGCGTCAGCAGGTGCAGGAGACGCTACGCAGACAGAAGCAGGAGATGCTGGAGGACCATCAGTGGCTGGAGAAAGAGGAGAAACTGCTGGTCAtctcCTCTCAAGGTCCTCCAGAGAAGCCACCGCGTGTTTCAGCTCAGccAGCACCGACAGCAGAGCTGGACCGCACAGATGATCTGGTCTACCAGAACGTGATGGAGATGGTGAAGGTGGTGGTGCAGCTGAAGAACCAGGTCAACACCCTTCCAGCATCAGAGTATGTGAGTGTGGTGAAGTCTGTAGGAATGACGCTGCGCAGTCTGATCCACAGTGTAGACGACATCCTGCCCTCGCTACACGAATCTATCAGGACAGAgatTGAAGGCACACAGAAGCTGCTGAATAAGGATCTGGCGGAgctgatcagtaagatgcgtctGGCTCAGCAGAACTCCGTCACGTCTCTGAAAGACGAGTGTAAGAAGCAGATGCTGGCGGCCGCTCACACACTCGCCATGGACTCCAAAAACCTGCTGGACGCCGTCGACCAAGCCAGAGTCAGAGCCAACACGGCCAGACCCGCCTCCTCGTGA

Function

symbol description
ptk2ba Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in several processes, including angiogenesis; epidermal growth factor receptor signaling pathway; and innate immune response. Predicted to act upstream of or within several processes, including regulation of actin cytoskeleton reorganization; regulation of bone mineralization; and signal complex assembly. Predicted to be located in cell junction; cell projection; and cytoskeleton. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in breast cancer and hypertension. Orthologous to human PTK2B (protein tyrosine kinase 2 beta).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0038083 peptidyl-tyrosine autophosphorylation biological_process
GO:0001525 angiogenesis biological_process
GO:0030500 regulation of bone mineralization biological_process
GO:2000249 regulation of actin cytoskeleton reorganization biological_process
GO:0006468 protein phosphorylation biological_process
GO:0002688 regulation of leukocyte chemotaxis biological_process
GO:0030334 regulation of cell migration biological_process
GO:0007165 signal transduction biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0007172 signal complex assembly biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0043197 dendritic spine cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004715 non-membrane spanning protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080207-1 Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in several processes, including angiogenesis; epidermal growth factor receptor signaling pathway; and innate immune response. Predicted to act upstream of or within several processes, including regulation of actin cytoskeleton reorganization; regulation of bone mineralization; and signal complex assembly. Predicted to be located in cell junction; cell projection; and cytoskeleton. Predicted to be active in dendritic spine and focal adhesion. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in breast cancer and hypertension. Orthologous to human PTK2B (protein tyrosine kinase 2 beta).

Ensembl:

ensembl_id ENSDARG00000022841

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023454 False 2688 mRNA 0.49 26 6113680 6198823
TCONS_00023455 False 3201 mRNA 0.48 30 6114126 6202816
TCONS_00023456 True 2511 mRNA 0.50 25 6114376 6198823

Neighbor

gene id symbol gene type direction distance location
XLOC_011869 ephx2 coding downstream 37414 6016243 ~ 6076266 (-)
XLOC_011868 CU571076.1 coding downstream 100009 6013555 ~ 6013671 (-)
XLOC_011866 NA coding downstream 140269 5961811 ~ 5973411 (-)
XLOC_011867 NA coding downstream 146334 5967249 ~ 5967346 (-)
XLOC_011865 NA coding downstream 220666 5889524 ~ 5893014 (-)
XLOC_011871 NA coding upstream 22057 6224873 ~ 6281640 (-)
XLOC_011872 BX000363.2 coding upstream 72390 6275206 ~ 6296111 (-)
XLOC_011873 oct2 coding upstream 129178 6331994 ~ 6349044 (-)
XLOC_011874 txlnbb coding upstream 155344 6358160 ~ 6382392 (-)
XLOC_011875 hivep2b coding upstream 190903 6393719 ~ 6399920 (-)
XLOC_011864 NA non-coding downstream 228752 5881077 ~ 5884928 (-)
XLOC_011884 CU469532.1 non-coding upstream 755794 6958610 ~ 6958730 (-)
XLOC_011892 NA non-coding upstream 1262024 7464840 ~ 7466352 (-)
XLOC_011894 BX296541.1 non-coding upstream 1301293 7504109 ~ 7505978 (-)
XLOC_011895 NA non-coding upstream 1306242 7509058 ~ 7534318 (-)

Expression


Co-expression Network