RNA id: TCONS_00024820


Basic Information

Item Value
RNA id TCONS_00024820
length 2035
lncRNA type read_through
GC content 0.45
exon number 5
gene id XLOC_011871
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6224873 ~ 6281640 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAAAACTCATCCAACAACGAAAGGATGAATGTTTGAGCAGCAGGTACTGATAGTGCGCCGTCATCCGCGGCATCGCCAGACCGGCCACTTTACCGGGGTCCACCCAGGAGAAGTTTGGAGGTTGAGCCGAAGCCATGGGTTTCTCTGTGGTCGTGACACTGGGAAGACGAGGGCCAAATCGGTGTCTCCGCTGGTCGTGCTGTTGGATGGAGAACTTCTCACAGAAGCCGAACCCAAAGTCTCGGTCAGAGCAGATGGTCTGTGTTCTGCTGGAGAGCTGCAGAGCAGACGGAGATTGTTCTGGGTCCACGTTTCTTCATTTGTCTGCTTGGAGAATCATAGAAACACATGGGACTGACCAGCCCTGGAGAGCAGTCTTTCTGGAGTAGATTGGATGTTTGCCCGGCCGCTGACTGCACTGAAGAGGCCTGACCCAGGGCGTGCGGGGCTGAGCATTGGCGGAGGGGTGTACGGTGCGTCGTCAGACATGCTGCTGGCCGTCCTCAGCTGACTGCGGAAGAGCACAGCGCCTCGAGATTCCTGACCGTCGCTGGGTGAAGGAATCATCAGCGGCACCAGACAGTGGCGGCTGATCTGGAGACTGAAGATACGGATTGGCGTTTTGGGAGAGAGAACGAAGATGTTGTTGTTGGTCCTGATAGTGGAAAATCTGCTGCTCCGGGACTTTAAAATCCTGTCTGTGTTCGTAAGATGGAGATTCAAGGCTTTCCCAAGAATCCAGGTGAGTTTTATTAGCAAACATACATCTTTGTTGCTGACCCAGAGCCATTTGATATGCCATCGGATGACTTTGATAACCGTGTGAAGGATGCCAGGAGCTTTTATGGAGATTTCTGTTGACCTGCTCCATGTTGTTGGCTTTCTGTTTCTGTTGGTATCCATAATGAAGCTGCTGGTGGTTTTGGTAAAGGCTATCTGACATGTTAAAGTTGGACTGATCGCACATCAGTTGCTGGTTAAAAACCGGCGACTCTACAGACTGCCTTTCCAATGCGCCTGAATGACTTTGAGTGAAAATTTCAGACATCTTCTCATCCCTACTCATTTCGCCAAAGAAAAGATGGACGTTTTTCGTGGGGAATGCCTTGGAGAATGAATCCAGCCTTTGAGGATTGTCTTTACAAATCATCAAAGGGTTGTTTTGAGATGCCACGTTGAACGGATAAATTCGAGATGTCTCTTGGAGGTCTTCGTGAGATGATGATCCCCATGATGGCGTTCTTCCACACGGATTGTATTCCCAACTACCGGCACTGTCAAGCATTGGAGAAAGCTCATGTCCTGGCGTTCCTGGAGACATTAGATGCTCTTGATTGAGTCGAGGAGACGTTTGGATCGAGCTCATGTTTGGTAAGCCATAATGAGATGCGCTTAATGCACTCGGGCTGTGCTGGAATAAATAGTTCCCGTTGGTGTGGTTCGTGAACTGATTAGTCTCGTACAGGTTTTCAGTCATCTTTAGAGAGGTTAAAGTGACACTAGTGAATTATTTTGAGGGGTCGTGATTACATGGTGGTTTCAGTGTCGCTGTGAAACATCAGATTTCCCCGTTGCTTGGACTCACAGGTTGTTGTTTTCTGAGACTCAGAtggttttactgtaaaatgaggAAGAGAGAAGGTGGTCACATGTTGTACTTAGTTTtataagttaatttatttactgtcaggaactaataatgaacaatatgtggaccatttattaatcatagttcagcattttcTAATGCATTATTACAATACAAATTATTGCTTCTTACactaaaatgacatttgctgtataaactactcatttaaaatgagctgaaacaattctTTAGGTTTTTTTTGGACAACCTAATTTTTTATGCcgaatccactttaatttgtaaaaactaaaaattaacttaattcctttatgttgtctaaacacaaattgattgtgtggaacccagtattttatattgtaattgtcacgatcaccagcgatcataACTCCCTAGATTGCTGGTTTGCAGGCACAATCAAGTATGG

Function

GO:

id name namespace
GO:0001894 tissue homeostasis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024818 lncRNA downstream 251462 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024817 lncRNA downstream 260763 5961811 ~ 5964110 (-) False XLOC_011866
TCONS_00024525 lncRNA downstream 331859 5889524 ~ 5893014 (-) True XLOC_011865
TCONS_00024524 lncRNA downstream 339945 5881077 ~ 5884928 (-) True XLOC_011864
TCONS_00024816 lncRNA downstream 570861 5651111 ~ 5654012 (-) True XLOC_011859
TCONS_00024822 lncRNA upstream 1183200 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024526 lncRNA upstream 1227418 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00024823 lncRNA upstream 1227516 7509156 ~ 7512065 (-) False XLOC_011895
TCONS_00024824 lncRNA upstream 1227516 7509156 ~ 7512071 (-) False XLOC_011895
TCONS_00024825 lncRNA upstream 1227516 7509156 ~ 7534302 (-) False XLOC_011895
TCONS_00023455 mRNA downstream 22057 6114126 ~ 6202816 (-) False XLOC_011870
TCONS_00023454 mRNA downstream 26050 6113680 ~ 6198823 (-) False XLOC_011870
TCONS_00023456 mRNA downstream 26050 6114376 ~ 6198823 (-) True XLOC_011870
TCONS_00023453 mRNA downstream 148607 6016666 ~ 6076266 (-) True XLOC_011869
TCONS_00023452 mRNA downstream 148789 6016243 ~ 6076084 (-) False XLOC_011869
TCONS_00023458 mRNA upstream 50354 6331994 ~ 6349044 (-) True XLOC_011873
TCONS_00023461 mRNA upstream 76520 6358160 ~ 6382392 (-) False XLOC_011874
TCONS_00023460 mRNA upstream 76520 6358160 ~ 6382392 (-) False XLOC_011874
TCONS_00023459 mRNA upstream 76520 6358160 ~ 6382392 (-) True XLOC_011874
TCONS_00023462 mRNA upstream 112079 6393719 ~ 6399920 (-) True XLOC_011875
TCONS_00023451 other downstream 211202 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 257527 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 261808 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023445 other downstream 493174 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023441 other downstream 928312 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023473 other upstream 309590 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023487 other upstream 676970 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023504 other upstream 1222469 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023505 other upstream 1361891 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 1530735 7812375 ~ 7818925 (-) True XLOC_011899

Expression Profile

//