RNA id: TCONS_00023452


Basic Information

Item Value
RNA id TCONS_00023452
length 2170
RNA type mRNA
GC content 0.47
exon number 20
gene id XLOC_011869
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 6016243 ~ 6076266 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAGTGTAGCAGTGGTCTCTTCAAGCGACGCACAGCAgTGTCAGTTTTTAAGGGATTTTCAACTAGTTTCCAATGAAGAAGGCAGTGTTGTTTAGTTTGTGGGGTGGTGTTGTTACCCCACAGATTGGTCAAGCATTTCAGAAGTTTGAGGAAACCACTGGCATTTCAAAGGGCTTCATAAAGAATGTGGAGACAAAACTTGGCAGTGACAACGCTCTGCATCGTGCAGAAAAGGGGAAAACAACCCTCGCTCAGATGATTCCTGAGTTTGACGCTGAGTGTCAGAAGGTAGCAGCGGATCAGGGTCTGTCTTTACCTGCCCAGTTCTCCACTCAGAAGCTTTTTGATGACATGGGGAAGGTGGAATTCAACATGGCATTTCTTGATGCCGCTGCTGTCCTCCGTCGTAATGGCATTGCtaccggcatcctggccaataTCTGGGTGGATGACACTGCGCAGAGAGGCAGCATCGCTAGGGTTTTATCCGTTTTAGAGAGCCGTTTTGACCTGGTTTTGCGATCATGCCATGCTGGTGTCCGAATACCTGAGCCAGACTTCTTCAAACATGCCCTCGAAAAACTTGCTGTTAAACCTCAAGAAgcACTATGGCTGGATGTGGATGAAGaaagtgtcaaagcagctgaaggTTTGGGAATTATGGCTGTTCAAGTCAAGGACGTCACTGAGGCTCTTACCGAAATCCAGAAGCTTACAGGAATAGAGGTCACCAGTGATCTCCAGCCGCCTTCCTGTGATCCTGAAAAGGTCTCTCATGGATATGTGAATATTAAGCCTGGTGTGAAGATCCACTATGTGGAGATGGGAGACGGTCCACCTGTTCTCCTGTGTCATGGATTCCCTGAGAGCTGGTTTTCCTGGAGGTATCAGATTCCGGCTTTGGCTGATGCAGGATTCAGGGTTCTGGCTCCTGATATGAAAGGTTACGGTGGCTCCACGGCTCCACCAGATATTGAGGAATACTCTCAAGAGCAGATCATGCTGGATTTGGTGACATTTTTGGATAAGATGGCCATTGCTCAGGTCACTCTGGTGGGCCATGATTGGGGCGGCGTTCTGGTCTGGAACATGGCACAGTTTCACCCTGAGAGAGTCCGAGCTGTGGCGTCTCTCAACACTCCTCTTTTCCCTGTGGATCCAAACACAAATCCGATAGAGAAACTGATGGCCATCCCCATCTTTgactaccagatctattttcagaaGCCCGGTGTTGCAGAGGCAGAGCTGGAAAAAAACCTTGAGCGAACCTTCAAGCTGATGTTCATATCAAGCAGTGATACAGATGGATTTCCTAAGTTATCCCCTGCTGGAGTTTGTCAGAGAGGTGGATTGTTTGTTGGGTCTCCGGATGATCCTCCGCGCAGCTCCATGCTGAGTGTGTCTGCGCTTCAGTTTTACACAGAGCAGTACAGCAAGAGCGGATTCAGAGGTCCACTCAACTGGTATCGTAACTACGAGAGGAACTGGCGCTGGATGGTCTCCAGACCGAGAGCGAAGATCCTGATGCCTGCTTTAATGGTGACGGCTGGAAAAGACCCTGTTCTGCTGCCAGCGTTTGCCACAGGGATGGAGAATCTGATCCCAAACCTCAGCAGAGGCCACATTGAGGAGTGCGGACACTGGACTCAGATGGAGAGGCCTGCGGAGCTCAATAAAATCCTCATCTCCTGGCTGAAGGAAACCCACCAGAAAGCCTCCATCTCTGTTCATCCCAAGTTATGAGGCGATGATCCTGATTTGACTGAATAAAGCACCCTAATGTCCAGGCTTGCTGACTGCATAATACCCATCCTGTGTCCTTTTGAGTAGATCTTCTGCTTCTTATATGAAGTCTTTTGTAATGCAATGCAATACTGAAGAGCGTAGCTAGATTTTGTCTTTTAAAGGCAGTGACTATTTATACTGTGCAAATAGCAGAAgctgtgtgttttgtttagttttttcaccTGCTCGTATAGTTCGTCAGTTGTGCAAATATCATTTCTGTTTACATTGTGTGCGGAAGCAGATGTCACTGCTTACCCTATAGTGGAAACGAGATGATGTTTGTTTGCCATTTATATttggtgccaaaaaaaaaatggaggaaaCAGAAACGGCTTGTAAATTTCATAAAAAACAGCAGATGACTCTTTCCCTGCCAGA

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0046839 phospholipid dephosphorylation biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0060841 venous blood vessel development biological_process
GO:0005777 peroxisome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0004301 epoxide hydrolase activity molecular_function
GO:0042577 lipid phosphatase activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
ko00590 Arachidonic acid metabolism
ko00625 Chloroalkane and chloroalkene degradation
ko04146 Peroxisome
ko05207 Chemical carcinogenesis - receptor activation
ko05208 Chemical carcinogenesis - reactive oxygen species
ko01009 Protein phosphatases and associated proteins
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-041212-70 Enables epoxide hydrolase activity. Acts upstream of or within hematopoietic progenitor cell differentiation and venous blood vessel development. Predicted to be active in peroxisome. Is expressed in cardiovascular system; digestive system; neural tube; somite; and spinal cord. Human ortholog(s) of this gene implicated in coronary artery disease; familial hypercholesterolemia; and hypertension. Orthologous to human EPHX2 (epoxide hydrolase 2).

Ensembl:

ensembl_id ENSDART00000058890

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024818 lncRNA downstream 42832 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024817 lncRNA downstream 52133 5961811 ~ 5964110 (-) False XLOC_011866
TCONS_00024525 lncRNA downstream 123229 5889524 ~ 5893014 (-) True XLOC_011865
TCONS_00024524 lncRNA downstream 131315 5881077 ~ 5884928 (-) True XLOC_011864
TCONS_00024816 lncRNA downstream 362231 5651111 ~ 5654012 (-) True XLOC_011859
TCONS_00024819 lncRNA upstream 148789 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024820 lncRNA upstream 148789 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024821 lncRNA upstream 169323 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024822 lncRNA upstream 1388756 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024526 lncRNA upstream 1432974 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00023448 mRNA downstream 138211 5863150 ~ 5878032 (-) True XLOC_011863
TCONS_00023447 mRNA downstream 156021 5829851 ~ 5860222 (-) True XLOC_011862
TCONS_00023446 mRNA downstream 247047 5756547 ~ 5769196 (-) True XLOC_011861
TCONS_00023444 mRNA downstream 283944 5662379 ~ 5732299 (-) False XLOC_011860
TCONS_00023443 mRNA downstream 405729 5599014 ~ 5610514 (-) True XLOC_011858
TCONS_00023454 mRNA upstream 37596 6113680 ~ 6198823 (-) False XLOC_011870
TCONS_00023455 mRNA upstream 38042 6114126 ~ 6202816 (-) False XLOC_011870
TCONS_00023456 mRNA upstream 38292 6114376 ~ 6198823 (-) True XLOC_011870
TCONS_00023457 mRNA upstream 199122 6275206 ~ 6296111 (-) True XLOC_011872
TCONS_00023458 mRNA upstream 255910 6331994 ~ 6349044 (-) True XLOC_011873
TCONS_00023451 other downstream 2572 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 48897 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 53178 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023445 other downstream 284544 5670918 ~ 5731699 (-) True XLOC_011860
TCONS_00023441 other downstream 719682 5243340 ~ 5296561 (-) True XLOC_011855
TCONS_00023473 other upstream 515146 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023487 other upstream 882526 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023504 other upstream 1428025 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023505 other upstream 1567447 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 1736291 7812375 ~ 7818925 (-) True XLOC_011899

Expression Profile

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